Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03910 709 / 0 ABCB29, ATATH12 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1) AT3G28345 227 / 5e-63 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT1G28010 224 / 7e-62 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT3G28415 222 / 3e-61 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT1G27940 218 / 5e-60 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT3G28360 216 / 2e-59 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT5G39040 211 / 3e-59 AtALS1, ABCB27, ALS1, ATTAP2 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) AT3G28390 215 / 5e-59 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28380 211 / 1e-57 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28860 208 / 1e-56 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G059700 [exp] 230 / 2e-66 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059600 [exp] 230 / 2e-66 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059800 [exp] 228 / 1e-65 AT5G39040 887 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.002G019600 [exp] 223 / 9e-62 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.017G097200 [exp] 214 / 2e-60 AT5G39040 892 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.011G133800 [exp] 217 / 1e-59 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G417600 [exp] 216 / 4e-59 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.010G003000 [exp] 214 / 8e-59 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.017G085000 [exp] 213 / 4e-58 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017024 [exp] 774 / 0 AT5G03910 712 / 0.0 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1) Lus10021348 [exp] 535 / 0 AT5G03910 481 / 4e-164 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1) Lus10015595 [exp] 243 / 2e-68 AT3G28860 971 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10032911 [exp] 239 / 6e-67 AT3G28860 960 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10036616 [exp] 218 / 5e-64 AT3G28345 479 / 6e-159 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10017271 [exp] 218 / 6e-60 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10035834 [exp] 218 / 6e-60 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10017270 [exp] 216 / 3e-59 AT1G27940 1686 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10043069 [exp] 215 / 6e-59 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10039458 [exp] 215 / 9e-59 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.006G211700.1 pacid=42769989 polypeptide=Potri.006G211700.1.p locus=Potri.006G211700 ID=Potri.006G211700.1.v4.1 annot-version=v4.1 ATGTCTCTTCTTCAATGTCAACTAAAACCCTCTCCTCCTTCGTCTTCATTCCCTTCTCCTCTCCACATGAAGAATCTGCAATCCCGACGCCGAATCCCCT TCCCTTCAAAACCCTTACAGCTAACAAACCCTACTCTCAAACTCCCTTCAAAAACCCTCCTTAAGCCCCTCTATTCCACCTTTTCTCTCTTTTCTTCTAT CGCCCCGCAACAAAGGCAACAGCTTCAAATAGGCCCCCATAAACAACAGCAACAAGGGAACACTAACGAACCATTTGATCCTCTTTCCATTATAAAACCC TTTATTTTTTCTCAGTATAAGCCAATCCTACTTGGTTGGCTTTGCAGTCTACTTTCTGTCCTTTCTTTATCCCAACTTGTGCCTAAATTTGGTCAATTCT CCTCTAGTATTGGTAAAATTAATGGGGTTACGCTGAGAAATGACGGGTTGGTGCTGGCTGGTTTGTTTTTGGCTAAGTTGATTGCTACTTATGGCCAGCA TGCACTCTTGTGGGAGGCTGCATTGAATGCCAGTTATAAGATTAGAGTTTTTGTTTTTGAGAGGGTTTTGGAGAGAGAATTGGGGTTTTTTGAAGGAGGA GGTGCTGTTTCTTCTGGGGATGTGGCGTATAGGATCACTGCTGAGGCTGCTGATGTCGCCGACACTCTCTATGCGCTTCTCAATACCATTGTGCCCAGTG CTCTGCAGTTATCAGCAATGGCCTCACGGATGTTGGTTATTAGCCCTGCCCTTTCCTTGATCTCAGCTATGGTGATTCCTTGCACAGCTCTTGCAATTGC ATACCTTGGAACCAGGCTTCGGAAGATATCTAAGAAGGCACAGCTTACTATTTCAGCTCTTTCAGCCTACCTTAACGAGGTTCTCCCGGCAATTCTTTTT GTGAAAGCAAGCAATGCAGAGTTTTGTGAGATTGCTAGGTTTGAAAGGCTTGCTTATGCTGACCTATCTGCACTTCTTACCAAAAGGAAAATGAAGGCGT TTATCCCTCAAATTGTACAGATTATATACTTTGGAGCATTATCCATCCTTTGTGTTGGATCAATGGTGGTTTCAAGTGGTTGTTTTGATGGTTGTAGCAT GGTTTCTTTTATAACCTCATTGATTTTTGTCGTTGAGCCAATCCAGGATGTTGGAAAAGCATACAATGAGTGGAAACAAGGAGAACCAGCTATTGAACGC TTGTTTGATTTGACCAGGTTTAAATCTAAGGTGACTGAAAAACCAGATGCTGTGGATTTGGACCATGTCTCGGGAGATGTCAAATTTTGTGACATCTCAT TTAGATATGGGGAAAATAGCCCTCTTGTATTGAACGGATTGAACCTTCATATCAAAGCTGGAGAGACAGTAGCTCTTGTTGGGCCATCTGGAGGAGGAAA GACAACCCTAATTAAAATGCTTCTCCGTCTCTATGATCCTTTACATGGTTGCATACTTGTTGATAACCAAAATATCCAAAACGTCCAGTTGGAAAGCTTG AGGAGGCATGTTGGTCTGGTTTCTCAGGATATAAGTCTTTTTTCAGGAACAGTTGCTGAAAACATTGGATATAGAGATATAATGACAAAAATAGACATGG AGAAGGTTGAGTTGGCAGCACAAACTGCAAATGCTGATGAATTTATTAGAAAGCTTCCCAAAGGGTACCAAACAAATATTGGGCCCAGGGGTTCAAGTTT AAGTGGAGGCCAGAAACAAAGACTAGCTATTGCAAGAGCACTCTACCAGGATTCCTCTATACTTATTTTGGATGAAGCAACTTCTGCTCTAGATAGCAGG TCTGAATTGCTGGTGAGACAAGCTGTGGAGCGTTTAATGGAAAACCATACTGTGCTTGTCATTGCCCACCGGTTGGAAACAGTTTTAATGGCTAAACGAG TATTGCTTTTAGATGATGGAAAACTTCAGGAGCTGACTCCGTCTCTCTTGGGCAGCCACCACAGCTCCCAGACATTTACTGGGCTTGTGATTTGA
AA sequence Show only first row Show all	>Potri.006G211700.1 pacid=42769989 polypeptide=Potri.006G211700.1.p locus=Potri.006G211700 ID=Potri.006G211700.1.v4.1 annot-version=v4.1 MSLLQCQLKPSPPSSSFPSPLHMKNLQSRRRIPFPSKPLQLTNPTLKLPSKTLLKPLYSTFSLFSSIAPQQRQQLQIGPHKQQQQGNTNEPFDPLSIIKP FIFSQYKPILLGWLCSLLSVLSLSQLVPKFGQFSSSIGKINGVTLRNDGLVLAGLFLAKLIATYGQHALLWEAALNASYKIRVFVFERVLERELGFFEGG GAVSSGDVAYRITAEAADVADTLYALLNTIVPSALQLSAMASRMLVISPALSLISAMVIPCTALAIAYLGTRLRKISKKAQLTISALSAYLNEVLPAILF VKASNAEFCEIARFERLAYADLSALLTKRKMKAFIPQIVQIIYFGALSILCVGSMVVSSGCFDGCSMVSFITSLIFVVEPIQDVGKAYNEWKQGEPAIER LFDLTRFKSKVTEKPDAVDLDHVSGDVKFCDISFRYGENSPLVLNGLNLHIKAGETVALVGPSGGGKTTLIKMLLRLYDPLHGCILVDNQNIQNVQLESL RRHVGLVSQDISLFSGTVAENIGYRDIMTKIDMEKVELAAQTANADEFIRKLPKGYQTNIGPRGSSLSGGQKQRLAIARALYQDSSILILDEATSALDSR SELLVRQAVERLMENHTVLVIAHRLETVLMAKRVLLLDDGKLQELTPSLLGSHHSSQTFTGLVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Potri.006G211700 [exp]	0	1
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Potri.006G102000 [exp]	1.00	0.8467
AT3G18100	MYB	ATMYB4R1	myb domain protein 4r1 (.1.2.3...		Potri.015G041500 [exp]	3.00	0.8425
AT2G30780			Tetratricopeptide repeat (TPR)...		Potri.016G119600 [exp]	3.16	0.8190
AT4G08350		GTA2, GTA02	global transcription factor gr...		Potri.004G162500 [exp]	4.47	0.7781
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Potri.016G116600 [exp]	6.63	0.8463
AT4G39680			SAP domain-containing protein ...		Potri.005G080500 [exp]	8.94	0.8299
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Potri.017G013500 [exp]	9.00	0.8083
					Potri.001G247100 [exp]	12.24	0.8007
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Potri.011G043600 [exp]	12.64	0.7848
AT2G18465			Chaperone DnaJ-domain superfam...		Potri.001G308900 [exp]	13.41	0.6947

Compare expression of checked genes

Potri.006G211700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.