Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52710 154 / 7e-45 unknown protein AT2G36220 144 / 2e-41 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G079500 [exp] 333 / 1e-114 AT2G36220 140 / 1e-39 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014206 [exp] 166 / 3e-49 AT3G52710 176 / 2e-53 unknown protein Lus10022709 [exp] 105 / 7e-28 AT2G36220 77 / 1e-17 unknown protein Lus10022708 [exp] 75 / 8e-16 AT3G52710 100 / 7e-26 unknown protein Lus10017030 [exp] 65 / 1e-11 AT3G52710 164 / 8e-49 unknown protein Lus10021354 [exp] 64 / 2e-11 AT3G52710 181 / 4e-55 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G212800.1 pacid=42767224 polypeptide=Potri.006G212800.1.p locus=Potri.006G212800 ID=Potri.006G212800.1.v4.1 annot-version=v4.1 ATGCCACAGGTGGATCTTGAAACTCTAGTCTCAGCCTGCGCCGGCGGCTCCTGCGACCGCAAAGTCGCATGTGAAACCATCGCCGCCTCCTCCACCACCA CCACCAACCATTCCCAGCCACCACTGGACTCCTCCGATCTCGCCGAAGTACCACCAGATTTCCCGCCAGAATCCTTCTGGCTTTCCAAAGATGCCGAACT CGACTGGTTCAGCACCAATGCTTACTACGAACGCAAGGATTCCACAAAAGGAAACTCGAACTCCACAAACTTAAACCCGAACATCATCCCCAACCCTAAC CCCTCCAACTCACAGCGTTTCTCCAGCTTGCACACTAAAGCGTCAATCATTGGCTTACCGAAGACACAGAAATCAACCTTCGTTGTTGACAAAAAGAATC GCCGTAACTGTAAACCTGGAAACACACGATTGTTTCCTAAACGGTCCGGTTCGACCGGTAAATCGGATTCGACGACCATGGTTGAACCGTCTTCACCGAA AGTATCTTGTATGGGAAGAGTGAGATCGAAGAAAGATCGTAACCGCAGATTGCGGAAGCAACAGCAAGAACAAAGATCTTTTCAATCAATCGGAAAGAAG GAAAGTACTAAAAGGGACAAGAAGGAAAAAAAGAGTTTCTTTGCCAGTTTTAAAGCCATCTTCAGGTCTAAGAGTAACAATAAAGATATATCACTGAAGA GTGGCAATGTCACGTCGCATGGTGGATCGGTTAGCGAGAGTTACGCGCTTAAGAAATCGAGTGATATTAGGGACCGGTTGCCGGCGAGTGATAGAGACGC GCCACCAAGAAGGAGCGTTGGAATGGAGCCGGTTGTCGGTTTGGGAGGAATGACGAGGTTTGCGTCCGGGAGGAGATCGGAGTCGTGGAGTGTCGAGATC GACGTGGTGTGA
AA sequence Show only first row Show all	>Potri.006G212800.1 pacid=42767224 polypeptide=Potri.006G212800.1.p locus=Potri.006G212800 ID=Potri.006G212800.1.v4.1 annot-version=v4.1 MPQVDLETLVSACAGGSCDRKVACETIAASSTTTTNHSQPPLDSSDLAEVPPDFPPESFWLSKDAELDWFSTNAYYERKDSTKGNSNSTNLNPNIIPNPN PSNSQRFSSLHTKASIIGLPKTQKSTFVVDKKNRRNCKPGNTRLFPKRSGSTGKSDSTTMVEPSSPKVSCMGRVRSKKDRNRRLRKQQQEQRSFQSIGKK ESTKRDKKEKKSFFASFKAIFRSKSNNKDISLKSGNVTSHGGSVSESYALKKSSDIRDRLPASDRDAPPRRSVGMEPVVGLGGMTRFASGRRSESWSVEI DVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52710			unknown protein		Potri.006G212800 [exp]	0	1
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270400 [exp]	1.73	0.9671
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Potri.004G185100 [exp]	2.82	0.9657
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.002G057200 [exp]	4.47	0.9523
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Potri.018G003800 [exp]	5.74	0.9594
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Potri.017G017600 [exp]	8.00	0.9370	Pt-MYB.40,MYB175
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.006G123400 [exp]	8.94	0.9574
AT1G24430			HXXXD-type acyl-transferase fa...		Potri.010G053800 [exp]	9.16	0.9512
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Potri.002G086700 [exp]	10.81	0.9404
AT4G14860	OFP	ATOFP11	ovate family protein 11 (.1)		Potri.010G087200 [exp]	11.61	0.9133
					Potri.001G427901 [exp]	11.95	0.9431

Compare expression of checked genes

Potri.006G212800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.