Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52720 261 / 4e-87 CAH1, ATACA1, ACA1 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) AT1G08080 206 / 7e-66 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) AT4G20990 198 / 1e-62 ATACA4, ACA4 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) AT2G28210 177 / 4e-55 ATACA2 alpha carbonic anhydrase 2 (.1) AT5G04180 176 / 6e-54 ATACA3, ACA3 alpha carbonic anhydrase 3 (.1) AT1G08065 162 / 1e-48 ATACA5, ACA5 alpha carbonic anhydrase 5 (.1) AT4G21000 155 / 3e-46 ATACA6, ACA6 A. THALIANA ALPHA CARBONIC ANHYDRASE 6, alpha carbonic anhydrase 6 (.1) AT5G56330 124 / 2e-33 ATACA8, ACA8 A. THALIANA ALPHA CARBONIC ANHYDRASE 8, alpha carbonic anhydrase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G079600 [exp] 420 / 7e-150 AT3G52720 271 / 8e-91 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Potri.004G212800 [exp] 216 / 1e-69 AT1G08080 347 / 3e-121 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.009G010200 [exp] 206 / 1e-65 AT1G08080 342 / 3e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.006G047400 [exp] 198 / 1e-62 AT4G20990 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.016G043700 [exp] 189 / 4e-59 AT4G20990 306 / 4e-105 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047500 [exp] 186 / 7e-58 AT4G20990 276 / 5e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G121900 [exp] 184 / 3e-57 AT1G08080 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022710 [exp] 240 / 6e-79 AT3G52720 218 / 4e-70 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Lus10021356 [exp] 226 / 2e-73 AT3G52720 231 / 6e-75 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Lus10017033 [exp] 223 / 7e-72 AT3G52720 231 / 4e-75 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Lus10021455 [exp] 215 / 3e-69 AT1G08080 343 / 1e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016105 [exp] 214 / 1e-68 AT1G08080 333 / 1e-115 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10021454 [exp] 208 / 1e-66 AT1G08080 300 / 1e-102 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016104 [exp] 208 / 3e-66 AT1G08080 344 / 7e-120 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10042030 [exp] 189 / 5e-58 AT4G20990 313 / 9e-107 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10014412 [exp] 183 / 2e-56 AT1G08080 277 / 2e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10031027 [exp] 181 / 4e-56 AT4G20990 235 / 2e-77 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00194 [poplar] [flax] Carb_anhydrase Eukaryotic-type carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Potri.006G212900.1 pacid=42770574 polypeptide=Potri.006G212900.1.p locus=Potri.006G212900 ID=Potri.006G212900.1.v4.1 annot-version=v4.1 ATGGCTCCTCAACCCTCCTACTCCTTCATTGCTATTGCATTGTTGCTTGCTGTCGCTTCTGCAAGTGCTACAGATCAAACTCAAGCATCTGCATTAGAAT TCAGTTACGCTGGTTCAAATAATGGCCCTGCCAACTGGGGAAGCTTGAACCTAAAATTCTCTGCATGCACGTCTGGAGAAACTCAGTCTCCTGTCAACAT TATCAAGAAAGAGGCCGTGAAAAACAAAAAATTGACACCCTTGACCAGGGATTACAAACGTGCAAACGCTACTCTTGTTAACAATGGCTTCAATATTGGG TTGAGCTATGAGGGGAATCCTGGAGTCTTGATTGTAGATCATCAAAACTACACATTGAAGGAAATGCACTGGCATTCTCCTTCCGAGCATCAGATTGACG GAATACAATACGCCGCCGAGCTTCATTTAGTCCACAAGAAAGATTCTGGCTCTGTCGCTGTTGTGTCAATACTCTACGAACTTGGTGACGCTGATCCATT TATCAACAAGATTAAAGACAAGCTGGATGCTCTAGCAAAGGAGGTTTGTGCTGGCAATGAAGAAGCCCGTATTCCTGTTGGGGTCTTGGACAATAAGCTG TTACGAAAAAATACCCGCAAGTATTACAGATACGTTGGTTCTTTCACCAGTCCTCCATGCACTGAAAATGTGATCTGGAACATTCTTGGCAAGGTGAGAA CAATATCGAAGGAGCAGCTAGAAGCCCTGAGAGCTCCATTGGGTGATGATTACAAGCAGAATTCAAGGCCTGTGCAGTCGCTGAAAGGAAGAACGATTGA ACTGTATAATGAATTCACCGACTAA
AA sequence Show only first row Show all	>Potri.006G212900.1 pacid=42770574 polypeptide=Potri.006G212900.1.p locus=Potri.006G212900 ID=Potri.006G212900.1.v4.1 annot-version=v4.1 MAPQPSYSFIAIALLLAVASASATDQTQASALEFSYAGSNNGPANWGSLNLKFSACTSGETQSPVNIIKKEAVKNKKLTPLTRDYKRANATLVNNGFNIG LSYEGNPGVLIVDHQNYTLKEMHWHSPSEHQIDGIQYAAELHLVHKKDSGSVAVVSILYELGDADPFINKIKDKLDALAKEVCAGNEEARIPVGVLDNKL LRKNTRKYYRYVGSFTSPPCTENVIWNILGKVRTISKEQLEALRAPLGDDYKQNSRPVQSLKGRTIELYNEFTD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52720		CAH1, ATACA1, A...	A. THALIANA ALPHA CARBONIC ANH...		Potri.006G212900 [exp]	0	1
AT3G21790			UDP-Glycosyltransferase superf...		Potri.016G016300 [exp]	4.47	0.9573
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.001G058800 [exp]	12.24	0.9700
					Potri.006G260985 [exp]	19.49	0.9642
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.015G016000 [exp]	25.21	0.9581
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Potri.005G098000 [exp]	35.07	0.9515	NAC077
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G223900 [exp]	38.26	0.9515
					Potri.011G005400 [exp]	42.33	0.9510
					Potri.003G010466 [exp]	44.36	0.9505
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G011200 [exp]	44.69	0.9492
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Potri.004G219450 [exp]	52.34	0.9482

Compare expression of checked genes

Potri.006G212900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.