Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03880 455 / 9e-162 Thioredoxin family protein (.1) AT4G10000 175 / 3e-52 Thioredoxin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102000 [exp] 180 / 8e-54 AT4G10000 434 / 2e-153 Thioredoxin family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021357 [exp] 430 / 4e-151 AT5G03880 426 / 2e-149 Thioredoxin family protein (.1) Lus10017034 [exp] 414 / 6e-145 AT5G03880 402 / 4e-140 Thioredoxin family protein (.1) Lus10001283 [exp] 179 / 3e-53 AT4G10000 395 / 5e-138 Thioredoxin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF13417 [poplar] [flax] GST_N_3 Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G213000.3 pacid=42768840 polypeptide=Potri.006G213000.3.p locus=Potri.006G213000 ID=Potri.006G213000.3.v4.1 annot-version=v4.1 ATGGCTGGAGTACTTAACATCCACAATTTTCCTCTTCTCCATTCAGTTCCTGGCAGCCGTAAAACACCCAAGAAGTCAATTCCTACCATTAGAGCTACCT CAGAGACCCCGACTTCATCTACTTCTACTTCTACTTCTACTTCTACTTCTTTTACTGCACCACCCAATTTCGAGCCACCAGAGCCAAAGCGGTTTGCAGT CAGACCCGACAAGACTTGGGATATTATTGGAGCTTCTCTTGCCTTGATTTTCCGGTTGGGTACTGGTGTTTTTGTTAATGGGTATTCTGTATCTTTTGTT TCCAAGGATGCAATTCCACCCGACCAATATTCTCTGGAAGTAGCTGGTTATAAAGTGAAAGAGACCTCAAAATTAGGCCCTCGACCAGAAAAGCCTATTG AGATATATGAGTTTGAAGGCTGCCCATTCTGTCGGAAGGTTAGAGAAATTGTTGCAGTGTTGGACCTTGATGTTCTGTTTTATCCTTGCCCAAAAAATGG TCCCAATTTTCGTCCCAAGGTCGCTCAGATGGGTGGAAAACAGCAGTTCCCTTACATGGTAGATCCAAATACTGGAACTGCAATGTATGAATCGGACGAC ATAATTAAGTATTTGGTTCAAAAATATGGTGATGGAAGTATTCCTTTCACGCTGTCGCTTGGTCTTTTAACGACTCTGACCGAAGGTTTTGCCATGATTG GTCGTATGGGAAAGGGGTCATCTTATACTCCATCTAAACTGCCACCCAAACCACTTGAACTATGGGCATACGAGGGTTCCCCGTTCTGCAAGATTGTTCG AGAAGTACTTGTAGAATTAGAATTGCCACATATTTTTCGAAGCTGTGCTCGTGGTAGTCCAAAACGACAGATACTATTTGAGAAAGCTGGGCATTTTCAG GCGCCTTACATTGAAGATCCAAATACTGGGGTCCAGATGTTTGAAAGCGCAGAAATTGTGGAATATCTAAAAGTAACATATGCAGGTTCATAA
AA sequence Show only first row Show all	>Potri.006G213000.3 pacid=42768840 polypeptide=Potri.006G213000.3.p locus=Potri.006G213000 ID=Potri.006G213000.3.v4.1 annot-version=v4.1 MAGVLNIHNFPLLHSVPGSRKTPKKSIPTIRATSETPTSSTSTSTSTSTSFTAPPNFEPPEPKRFAVRPDKTWDIIGASLALIFRLGTGVFVNGYSVSFV SKDAIPPDQYSLEVAGYKVKETSKLGPRPEKPIEIYEFEGCPFCRKVREIVAVLDLDVLFYPCPKNGPNFRPKVAQMGGKQQFPYMVDPNTGTAMYESDD IIKYLVQKYGDGSIPFTLSLGLLTTLTEGFAMIGRMGKGSSYTPSKLPPKPLELWAYEGSPFCKIVREVLVELELPHIFRSCARGSPKRQILFEKAGHFQ APYIEDPNTGVQMFESAEIVEYLKVTYAGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03880			Thioredoxin family protein (.1...		Potri.006G213000 [exp]	0	1
AT5G12470			Protein of unknown function (D...		Potri.001G262200 [exp]	1.41	0.9875
AT5G22620			phosphoglycerate/bisphosphogly...		Potri.004G187700 [exp]	3.74	0.9802
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Potri.006G254500 [exp]	5.47	0.9762
AT1G18060			unknown protein		Potri.012G052300 [exp]	5.47	0.9794
AT1G54520			unknown protein		Potri.005G049500 [exp]	7.48	0.9773
AT1G32060		PRK	phosphoribulokinase (.1)		Potri.003G099400 [exp]	7.54	0.9801
AT3G02730		TRXF1, ATF1	thioredoxin F-type 1 (.1)		Potri.019G054800 [exp]	8.12	0.9758	PtrcTrxf
AT3G44620			protein tyrosine phosphatases;...		Potri.009G146800 [exp]	8.48	0.9770
AT4G24770		CP31, ATRBP33, ...	ARABIDOPSIS THALIANA RNA BINDI...		Potri.012G090200 [exp]	8.66	0.9795
AT2G35260			unknown protein		Potri.001G143400 [exp]	9.38	0.9694

Compare expression of checked genes

Potri.006G213000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.