Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10120 122 / 1e-35 unknown protein AT5G03890 102 / 8e-28 unknown protein AT3G61920 54 / 2e-09 unknown protein AT5G62900 47 / 7e-07 unknown protein AT1G64700 46 / 2e-06 unknown protein AT2G01340 45 / 4e-06 At17.1 unknown protein AT1G18290 44 / 8e-06 unknown protein AT1G66480 43 / 2e-05 PMI2 plastid movement impaired 2 (.1) AT1G60010 42 / 6e-05 unknown protein AT5G37840 41 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G079700 [exp] 250 / 1e-86 AT3G10120 114 / 1e-32 unknown protein Potri.012G022300 [exp] 70 / 2e-15 AT5G03890 62 / 3e-12 unknown protein Potri.015G005700 [exp] 64 / 4e-13 AT5G03890 49 / 2e-07 unknown protein Potri.011G153000 [exp] 52 / 2e-08 AT1G64700 160 / 1e-49 unknown protein Potri.001G448500 [exp] 50 / 6e-08 AT1G64700 154 / 3e-47 unknown protein Potri.001G448600 [exp] 50 / 9e-08 ND / Potri.014G104900 [exp] 47 / 7e-07 AT3G61920 130 / 4e-38 unknown protein Potri.015G072501 [exp] 45 / 2e-06 AT5G50090 152 / 4e-47 unknown protein Potri.002G178900 [exp] 44 / 1e-05 AT3G61920 142 / 6e-43 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021358 [exp] 127 / 1e-37 AT3G10120 122 / 2e-35 unknown protein Lus10017035 [exp] 108 / 6e-30 AT3G10120 119 / 7e-34 unknown protein Lus10027167 [exp] 50 / 2e-08 AT3G10120 52 / 4e-09 unknown protein Lus10039676 [exp] 50 / 2e-08 AT3G10120 56 / 2e-10 unknown protein Lus10008274 [exp] 49 / 3e-07 AT1G64700 118 / 9e-33 unknown protein Lus10015117 [exp] 43 / 2e-05 AT5G03890 44 / 3e-06 unknown protein Lus10036005 [exp] 42 / 9e-05 AT2G01340 174 / 2e-54 unknown protein Lus10043472 [exp] 41 / 0.0001 AT5G37840 134 / 2e-39 unknown protein Lus10016709 [exp] 40 / 0.0004 AT2G01340 147 / 7e-45 unknown protein Lus10009120 [exp] 39 / 0.0007 AT4G18975 198 / 1e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14009 [poplar] [flax] DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence Show only first row Show all	>Potri.006G213100.1 pacid=42770544 polypeptide=Potri.006G213100.1.p locus=Potri.006G213100 ID=Potri.006G213100.1.v4.1 annot-version=v4.1 ATGGGGAATTGCCTGGTTCTGCAAGCAAATGTTATCAAGGTCATGAAACCAGATGGGAAGATCCTTGAATACCAAGCACCCATAAAAGTCCAGCAAGTTC TGTCAGATTTCTCTGGTCATGCAATAGCTGATTCGCTTCAGGCTTTCCAGCATCTTCCGCCAGACACCAGCCTACTTGGTGGAGACCACTTGTACTATCT TGTGCCTCTCCAACTGCCATCCCCACAGGCTAAGAAGAAGAAAGTAAGATTTTCAATTCCAGAGGAGGAGGCCAAAGATGTGCAAGAAAAAACCAGTACT GTGGTGAGAATCAAGCTGGTGATCAGCAAGCAAGAACTGCAGGAGATGCTAAGAAAGGGAGGGGTCTCAGTTGATGATATGGTTTCTCATCTTCAGGGTC AACAGAGAGTGCAAAAGGTGGATATCTCCGGTAGTGATAGTGAACATAAAGGTTGGAAGCCTGAGCTGGAAAGCATACCTGAAAGAAGCCACTAG
AA sequence Show only first row Show all	>Potri.006G213100.1 pacid=42770544 polypeptide=Potri.006G213100.1.p locus=Potri.006G213100 ID=Potri.006G213100.1.v4.1 annot-version=v4.1 MGNCLVLQANVIKVMKPDGKILEYQAPIKVQQVLSDFSGHAIADSLQAFQHLPPDTSLLGGDHLYYLVPLQLPSPQAKKKKVRFSIPEEEAKDVQEKTST VVRIKLVISKQELQEMLRKGGVSVDDMVSHLQGQQRVQKVDISGSDSEHKGWKPELESIPERSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10120			unknown protein		Potri.006G213100 [exp]	0	1
AT2G33020		AtRLP24	receptor like protein 24 (.1)		Potri.011G141100 [exp]	3.46	0.8085
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.016G059800 [exp]	5.74	0.8235
AT1G25420			Regulator of Vps4 activity in ...		Potri.010G124100 [exp]	8.94	0.7858
AT1G78800			UDP-Glycosyltransferase superf...		Potri.001G393000 [exp]	9.59	0.7937
					Potri.010G186750 [exp]	11.22	0.7772
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Potri.019G099900 [exp]	13.00	0.7657
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.004G112300 [exp]	15.42	0.7635
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Potri.001G060000 [exp]	18.00	0.7801
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Potri.010G010448 [exp]	24.49	0.7651
AT5G44950			F-box/RNI-like/FBD-like domain...		Potri.012G099400 [exp]	25.61	0.7643

Compare expression of checked genes

Potri.006G213100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.