Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42450 545 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 334 / 1e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G25360 326 / 8e-103 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 313 / 3e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G24000 305 / 4e-96 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 308 / 1e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 307 / 1e-95 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G21090 298 / 3e-94 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G49142 300 / 1e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 295 / 3e-92 SLO1 SLOW GROWTH 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G104700 [exp] 353 / 6e-114 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G217900 [exp] 334 / 3e-107 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.012G048800 [exp] 328 / 1e-103 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G019500 [exp] 317 / 2e-100 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.009G044700 [exp] 317 / 7e-100 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G085500 [exp] 313 / 9e-98 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G027800 [exp] 313 / 1e-97 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 317 / 2e-97 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G051300 [exp] 303 / 1e-95 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034408 [exp] 615 / 0 AT5G42450 538 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019149 [exp] 513 / 1e-176 AT1G13560 477 / 7e-165 aminoalcoholphosphotransferase 1 (.1.2) Lus10015898 [exp] 341 / 5e-109 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020918 [exp] 328 / 2e-105 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 329 / 3e-105 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039117 [exp] 320 / 9e-102 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 320 / 4e-100 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038741 [exp] 316 / 5e-100 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 317 / 2e-99 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10010998 [exp] 315 / 3e-99 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G213200.1 pacid=42767445 polypeptide=Potri.006G213200.1.p locus=Potri.006G213200 ID=Potri.006G213200.1.v4.1 annot-version=v4.1 ATGATGCAGCCTGTCCAAATTTACAGAAGACTGATACAGATGAAACCTGGTTTTTGCAGATTATCTCAACTTCAAACCTTACCCAGAAAAATCCACTCAG TAGCTTTTAAATCTAACCACTTTTTAGCACATGAATATATTCTCAAACCAGAACACTCCCATTTCTCTCGAAATGCACTTCAAGTGTTCGATACAATTCC TGACCTGGATGTTGTATCAGCAACAACCATAATTGGTCAGTTTGCTAGGCTGCATCAATACAGAGAAGCAATACAACTCTTCTCTAGAATGCTTTTTTTG AATGTTACGCCCAATGAGTTTACATTTGGCACTGTTATTCACTCCTCAACCTCACTTGGAGACCTTAACTTAGGGAGGCAATTCCAAGCTTGTGCAATGA AGATGGGCCTTAATTACATGGTCTTTGTGGGCAGTGCAGTCTTAGATTCTTATGCCAAGTTGGGTTCTATTCAAGAAGCTCAAAGAGCTTTTGAGGACAT ACAACATCCTAATATTGTTTCTTACACTGCATTGATACATGGGTACCTCAAGAAAGGGAGGTTTGAAGAGGCATTCGAGCTTTTTAAACAGATGCCGGAG AGAAATATTGTGTCGTGGAATGCGATGATTGGTGGGTTTAGTCAGATGGGACAGAATGAAGAGGCTGTCAATCTTTTTGTTGAGATGATTAGAGAAGGCT TGGTGCCTTGTCAATATACATTTCCTTGTGCTATTATTGCTGCTGCAAATATAGCAGCACTTGAAATGGGCAGAAGTTTTCATGCTTGTGCTATTAAGAC AATGGGTGAGTTTAGTGTGTTTGTTGGCAATTCTCTAATTAGCTTTTATGCAAAATGTGGAAGCATGGAAGATAGTCTCCGTCTTTTTTATGAACTTCCT GAAAGAACTATCGTCTCTTGGAATGCTGTGATTTGTGGCTTTGCACAGAATGGGAGAGGAGAGAATGCTGTGGACTTCTATGAAAGAATGAGGAACACCG GTCTGAGACCTGATAGTGTTACGCTACTTGGCCTGTTATGGGCTTGTAATCATGCTGGTCTTGTCGACAAGGGGTATTCGTATTTCAATCGTGCAAGGCT GGAGCACCCCAGTTTGTTAAAACCTAAACATTATGCTTGTATGGTTGATCTACTGTCTCGCTGTGGATGTTTCAAAGAAGCTCAGGAGTTTCTTCGTGAC TTGCCTTTCAATCCGGGAGTTGGTTTTTGGAAGGCACTGCTTGGAGGCTGCAAGATACATTCAAATACGGAACTGGGGGCATTAGCCGGGAGAAATATCC TAGATTTGGATCCCAAAGATGCATCATCATATATCATGTTGTCAAATGCACACTCTGCTGCTGGTAGATGGCAGGATGCGTCGGTAATTAGGCAAGAGAT TCATGCGAGGGGGTTGAAGAGAATTCCAGCTTCCAGTTGGATCGAAATCAAAACCAAAGTTCATGTCTTTGTCAACTGTGACATGAGTCATCACCAAAAG GATGATATTTATAGTGTCTTGAACTTCTTATATTGGGAAATGGACTCAGATTGA
AA sequence Show only first row Show all	>Potri.006G213200.1 pacid=42767445 polypeptide=Potri.006G213200.1.p locus=Potri.006G213200 ID=Potri.006G213200.1.v4.1 annot-version=v4.1 MMQPVQIYRRLIQMKPGFCRLSQLQTLPRKIHSVAFKSNHFLAHEYILKPEHSHFSRNALQVFDTIPDLDVVSATTIIGQFARLHQYREAIQLFSRMLFL NVTPNEFTFGTVIHSSTSLGDLNLGRQFQACAMKMGLNYMVFVGSAVLDSYAKLGSIQEAQRAFEDIQHPNIVSYTALIHGYLKKGRFEEAFELFKQMPE RNIVSWNAMIGGFSQMGQNEEAVNLFVEMIREGLVPCQYTFPCAIIAAANIAALEMGRSFHACAIKTMGEFSVFVGNSLISFYAKCGSMEDSLRLFYELP ERTIVSWNAVICGFAQNGRGENAVDFYERMRNTGLRPDSVTLLGLLWACNHAGLVDKGYSYFNRARLEHPSLLKPKHYACMVDLLSRCGCFKEAQEFLRD LPFNPGVGFWKALLGGCKIHSNTELGALAGRNILDLDPKDASSYIMLSNAHSAAGRWQDASVIRQEIHARGLKRIPASSWIEIKTKVHVFVNCDMSHHQK DDIYSVLNFLYWEMDSD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42450			Pentatricopeptide repeat (PPR)...		Potri.006G213200 [exp]	0	1
AT5G59600			Tetratricopeptide repeat (TPR)...		Potri.001G243800 [exp]	4.69	0.8987
AT1G14990			unknown protein		Potri.010G112300 [exp]	7.74	0.8819
AT3G19508			unknown protein		Potri.001G299200 [exp]	9.16	0.8642
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Potri.005G252300 [exp]	11.00	0.9012
AT5G60335			Thioesterase superfamily prote...		Potri.006G133800 [exp]	12.24	0.8667
AT5G52850			Pentatricopeptide repeat (PPR)...		Potri.004G071800 [exp]	15.65	0.8770
AT5G08305			Pentatricopeptide repeat (PPR)...		Potri.007G073100 [exp]	21.21	0.8695
					Potri.005G027500 [exp]	22.24	0.8653
AT5G58770			Undecaprenyl pyrophosphate syn...		Potri.001G250900 [exp]	22.80	0.8499
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.003G160100 [exp]	25.03	0.8546

Compare expression of checked genes

Potri.006G213200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.