Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53540 434 / 8e-137 unknown protein AT4G28760 138 / 5e-33 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT5G43880 119 / 4e-27 Protein of unknown function (DUF3741) (.1) AT2G20240 103 / 2e-22 Protein of unknown function (DUF3741) (.1) AT2G39435 96 / 1e-20 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G080200 [exp] 1242 / 0 AT3G53540 234 / 1e-64 unknown protein Potri.010G211700 [exp] 284 / 8e-82 AT2G39435 155 / 2e-40 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Potri.002G253600 [exp] 172 / 7e-44 AT4G28760 752 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.014G194600 [exp] 152 / 1e-37 AT4G28760 583 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.001G103400 [exp] 67 / 5e-11 AT2G45900 86 / 5e-17 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Potri.014G084600 [exp] 52 / 2e-06 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.001G239500 [exp] 49 / 3e-05 AT5G02390 149 / 6e-37 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.012G132900 [exp] 45 / 0.0003 AT5G62170 247 / 1e-71 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025296 [exp] 617 / 0 AT3G53540 456 / 7e-146 unknown protein Lus10024434 [exp] 597 / 0 AT3G53540 449 / 2e-144 unknown protein Lus10022843 [exp] 130 / 5e-31 AT4G28760 369 / 2e-116 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10003295 [exp] 120 / 8e-28 AT2G39435 115 / 3e-27 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Lus10011911 [exp] 119 / 3e-27 AT4G28760 535 / 9e-179 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10030320 [exp] 99 / 4e-21 AT2G39435 99 / 6e-22 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Lus10025295 [exp] 60 / 1e-10 AT3G53540 67 / 2e-14 unknown protein Lus10002008 [exp] 59 / 2e-08 AT1G63670 100 / 2e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10035490 [exp] 57 / 6e-08 AT1G63670 100 / 1e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10021148 [exp] 49 / 2e-05 AT1G74160 236 / 9e-69 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12552 [poplar] [flax] DUF3741 Protein of unknown function (DUF3741) PF14309 [poplar] [flax] DUF4378 Domain of unknown function (DUF4378) PF14383 [poplar] [flax] VARLMGL DUF761-associated sequence motif
Representative CDS sequence Show only first row Show all	>Potri.006G213700.2 pacid=42767709 polypeptide=Potri.006G213700.2.p locus=Potri.006G213700 ID=Potri.006G213700.2.v4.1 annot-version=v4.1 ATGGAGAGATTTCAGCTCAGAAGGTCCAATTCCTCGCCTTTTTCTCCTCTTCATAGTCATAATCTTAGCAGAGAAGGAAACGGGCTGGTTGGGAAACCGA GAAACTTCCCAAATTTGGTCTCTGATTCTAGTTCTCAGAGCGACGACGATCTGTTCACTCGTGAGTTGGGGTGGAGATCTCCAAAACAAGCAGCTGGAAC ACCAATAAAGAAGTTATTAGAAGAAGAGATGTCGAGAAAATCTGATTCCAAAAGAAGGTCACCGAGTGTTATTGCCAGATTGATGGGCCTTGATGGGTTA CCACCGCAGCAATCTTCTCATAAACAACAAAAGAAGTCCTTGGAGAACTACACACAAAGGATGGTATTGACAGAGAAAGCTCAAAGAAACAATGCCTCAT ATGGTCGGCGGTCATCCAGAAAAAGCTCGAAGGATGAGCAAGAATTTAAAGATGTATTTGAAGTTTTAGACCCATCAAAGATGGATAGTAGTAGTTACTC GTCACGGGGAACTGCACACTCAAAGCTCACAGCGGCAGAGATGGCATTCATTCAGCAGAAATTCATGGATGCTAAACGGCTTTCAACTGATGAAAAGCTT CAGAATTCAAGGGAATTTCATGATGCTATTGAGGATCTGGACTCCAACAAGGATCTTTTGCTGAAATACCTTCAGCAGCCAGATTCCCTGTTCACAAAGC ATCTGCATGATCTACAAGGTGTCCCTTCACAATCCCATTGTGGTCAGACTCGCATATCAGATATGAAGCCATCACATCCTCCACACTGTGGGAGCAGTGG CCTAGGCTCCAATATAGAGAGGCAAACTGCATTGAAGAATCGAAGAAAAAACCATGTTGATCCTGCTAGCCACTCTCATGGCAAGCATGGAGCTCAAAAC CCAGTCGAGTTGTCAAAAATTCAACTGGATCAAAAAGACGAGTCCGCCATTCTCCCTACAAGGATTGTTGTTCTGAAACCAAATCTTGGGAGAACGCAGA ATTCTACAAAAAATACTTCATCGCCTCAATATTCTCGTGCTTCACCTTTAGATTGTAGGCAACACACCGAACCTCCTGGTATCAAGAACAGGGAGGTGGT GTCATATGGAAAGAAAAAGTTTCCTGATGATGCAGGGCCCTCAAGGTATAAGTCTAGAGAATCTAGAGAAATCGCAAAGGAAATAACTAGGCAAATGAGA GAAAGTTTTGGCAACGGCTCCATGAGTTTTTCAACACCTGCTTTTATAGGGTATGCAAGGGATGAGAGTTCGCCAGACATGTCTGAAAATGAGTCTGCAA ATGAATCAGAGGAGACAACAGTGACTTCCAGAAATTCCGTTGATTGGAGCAACCGATACAGACCTTCATCATCATGCTCTACCGAGTCATCAGTGAGCAG AGAGGCCAGGAAGAGACTTTCAGAGAGGTGGAAAATGACTCATAAGTCTGTGGACATGGGAATCGTTAGTCGTAGCAACACACTAGGTGAAATGCTTGCT ATCCCCGATTTGGAAACAAGGTCGGGAAATTCAGATGCAATGATCTGCAAAAAAGTATTTAGTGATAAAGGTGATCGCAAACATGGAGCAGTTAGGAGGG ATGAACCTTTGGGTATTAGCAGCAGGGAAGGCTGGAAGGATGTTGGTACCGGAAATCTATCTAGATCAAGGTCTGTGCCTGCTACATCTACTGTGATCAG CAGTCCTAGACTAGGCATGCGCCATGAAAATGTATGCCATGACAGATATATAATCCCAAAGCAATTGATCCAGCAGGAAAGAAACAGAACAATAAAAGGC AATTTCAGTAAGAGAGAATGTTCACCTTCTAGAAATTCCAGATCCCCTACTAAGAATTCTCACGTGTCTAGCTGCTCATATAGAGATCACAGTGACACTT TCCGGGAAGTTAATTTTGGTTTGGATCAAGTGCAGAGCGAGATCGCAGAAGATGATTCACTTGAACAAATTTGTACAGTTTCTGAGACACCAGATTCTAT TGTCACAGATACAAGTTTAGTTGTTGAAAATGTGGTGGATGTGGCAATTGAGAACAAAGCCATGCCTTCGATGCCTATTAAACAAGAATCATCAACTTAC ATGTTGGTAAAAGGCGATTCCTCTACTAGTGATCTGGAAGTTTTAAGTTCACAGAAACCATCAAATGGGCCATCCGATAAAGGTTCAGTTTCCATGCAGC ACCCTGTAACCAAAGTAGAATCTCCAGCATGCTCGAAGGAGACTGATCAACCCAGTCCTGTCTCGGTTCTTGAAACTCCTTTTCCAGACGACCTGTCATC TGGTTCTGAGTGCTTTGAGAGTCTCAGCGCTGACCTGAGTGGACTTCGGATGCAGATTCAACTACTTAGGTTGGAGTCAGAAGCATATGAGGAAGGACCC ATGCTCATCTCAAGTGATGAAGATACCGAGGAGGGCCCTGTTGGATTTACAGAAGAGAGACAAATAGCTGCCGAGAGCAAGGAATTTTCCTACATAGTAG ATGTATGTTTAGACTCCGGTATTAATGATGCCGATCCTGATACTTTTCTGAGAACATTGCACTCCCCAGAATGCCCTGTCAACCCCTTGATATTTGAAGA ACTTGAGAAGAAGTACTGTAATCATGCATCCTGGCCAAGGTCTGAAAGGAGGCTGCTGTTTGACCGTCTAAATATAGCCCTTCTGATGATTTACCAGCAA TATGCAAATTCACACCCGTGGGTAAGGTCTGCAACCATGATTAGTCCCAAGTGGATAAAAAATGGACTCAAGGATTGTCTTTGCAAATTGATCGGTAGCC AAGTTACGACAGCTAACGAGGACGTCGCAGCGGACAAGATACTGGAAGGGGAATCGCCGTGGTTGGATTTGAGGGAGGACGTTGATGTAATAGGTAGGGA AATTGAGAGGCTATTGACAGAAGAGTTAGTAAGAGAGCTAGTAGCAGTGTAG
AA sequence Show only first row Show all	>Potri.006G213700.2 pacid=42767709 polypeptide=Potri.006G213700.2.p locus=Potri.006G213700 ID=Potri.006G213700.2.v4.1 annot-version=v4.1 MERFQLRRSNSSPFSPLHSHNLSREGNGLVGKPRNFPNLVSDSSSQSDDDLFTRELGWRSPKQAAGTPIKKLLEEEMSRKSDSKRRSPSVIARLMGLDGL PPQQSSHKQQKKSLENYTQRMVLTEKAQRNNASYGRRSSRKSSKDEQEFKDVFEVLDPSKMDSSSYSSRGTAHSKLTAAEMAFIQQKFMDAKRLSTDEKL QNSREFHDAIEDLDSNKDLLLKYLQQPDSLFTKHLHDLQGVPSQSHCGQTRISDMKPSHPPHCGSSGLGSNIERQTALKNRRKNHVDPASHSHGKHGAQN PVELSKIQLDQKDESAILPTRIVVLKPNLGRTQNSTKNTSSPQYSRASPLDCRQHTEPPGIKNREVVSYGKKKFPDDAGPSRYKSRESREIAKEITRQMR ESFGNGSMSFSTPAFIGYARDESSPDMSENESANESEETTVTSRNSVDWSNRYRPSSSCSTESSVSREARKRLSERWKMTHKSVDMGIVSRSNTLGEMLA IPDLETRSGNSDAMICKKVFSDKGDRKHGAVRRDEPLGISSREGWKDVGTGNLSRSRSVPATSTVISSPRLGMRHENVCHDRYIIPKQLIQQERNRTIKG NFSKRECSPSRNSRSPTKNSHVSSCSYRDHSDTFREVNFGLDQVQSEIAEDDSLEQICTVSETPDSIVTDTSLVVENVVDVAIENKAMPSMPIKQESSTY MLVKGDSSTSDLEVLSSQKPSNGPSDKGSVSMQHPVTKVESPACSKETDQPSPVSVLETPFPDDLSSGSECFESLSADLSGLRMQIQLLRLESEAYEEGP MLISSDEDTEEGPVGFTEERQIAAESKEFSYIVDVCLDSGINDADPDTFLRTLHSPECPVNPLIFEELEKKYCNHASWPRSERRLLFDRLNIALLMIYQQ YANSHPWVRSATMISPKWIKNGLKDCLCKLIGSQVTTANEDVAADKILEGESPWLDLREDVDVIGREIERLLTEELVRELVAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53540			unknown protein		Potri.006G213700 [exp]	0	1
AT2G38840			Guanylate-binding family prote...		Potri.005G217300 [exp]	2.23	0.8922
AT2G31900		ATMYO5, PCR11, ...	MYOSIN XI F, MYOSIN 5, myosin-...		Potri.009G025300 [exp]	3.46	0.8743
AT1G68410			Protein phosphatase 2C family ...		Potri.008G123600 [exp]	6.92	0.8597
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Potri.010G235000 [exp]	9.79	0.8468
AT5G04420			Galactose oxidase/kelch repeat...		Potri.008G030901 [exp]	11.57	0.8830
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Potri.006G237500 [exp]	12.12	0.8528	Pt-HB1.6
AT5G50000			Protein kinase superfamily pro...		Potri.015G074400 [exp]	13.26	0.8663
AT1G77680			Ribonuclease II/R family prote...		Potri.005G174800 [exp]	13.92	0.8274
AT1G63430			Leucine-rich repeat protein ki...		Potri.001G106600 [exp]	15.29	0.8503
AT2G37980			O-fucosyltransferase family pr...		Potri.006G095300 [exp]	16.00	0.8784

Compare expression of checked genes

Potri.006G213700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.