Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53520 709 / 0 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT3G62830 603 / 0 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47650 600 / 0 UXS4 UDP-xylose synthase 4 (.1.2) AT3G46440 473 / 4e-167 UXS5 UDP-XYL synthase 5 (.1.2) AT2G28760 471 / 1e-166 UXS6 UDP-XYL synthase 6 (.1.2.3) AT5G59290 470 / 5e-166 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT2G27860 112 / 2e-27 AXS1 UDP-D-apiose/UDP-D-xylose synthase 1 (.1) AT1G08200 112 / 4e-27 AXS2 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) AT5G28840 103 / 3e-24 GME "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) AT3G14790 104 / 6e-24 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G080500 [exp] 786 / 0 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.002G204400 [exp] 610 / 0 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 600 / 0 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G053100 [exp] 479 / 2e-169 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.010G207200 [exp] 478 / 4e-169 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 475 / 7e-168 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.004G189900 [exp] 107 / 2e-25 AT1G08200 717 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) Potri.005G053000 [exp] 106 / 2e-25 AT5G28840 720 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.009G150600 [exp] 104 / 1e-24 AT1G08200 736 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015038 [exp] 709 / 0 AT3G53520 720 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10024436 [exp] 707 / 0 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10025293 [exp] 689 / 0 AT3G53520 715 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10030368 [exp] 600 / 0 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10003605 [exp] 597 / 0 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10006510 [exp] 562 / 0 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10037499 [exp] 479 / 1e-168 AT3G62830 551 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10005450 [exp] 476 / 1e-168 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10001707 [exp] 476 / 2e-168 AT2G28760 636 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10005155 [exp] 476 / 2e-168 AT2G28760 639 / 0.0 UDP-XYL synthase 6 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.006G214000.1 pacid=42767691 polypeptide=Potri.006G214000.1.p locus=Potri.006G214000 ID=Potri.006G214000.1.v4.1 annot-version=v4.1 ATGATGAAACAATTACACAAACAAACCAGCGTGAATCACAGGAGAGAAGATGAAATCCCAACTTCAACTCAATCTTACACACCTAAGACACTAAAACACC CTAGATCCATTTCTTATATCTTCAAAGAACAACGCTTTCTTTTCATTCTTGTTGGCATTTTAATTGGTTCTGCTTTCTTCATTTTCCAGCCCACTCTCTC CCGCCTTAATCCATCTACCCATTCTTCTATCCCCACTTCAATTTATCATCGCCACCAAGATTCCTCATCTGGGTCCTCGGGGTTTGCCTCGAAGGGATCG TTTCCAGGCCGGGTCCCAGCTGCGATCGGGAGGAAGAGGCTGCGTATTGTGGTTACTGGTGGGGCTGGATTTGTTGGGAGTCACTTGGTGGATAAATTGA TCTCGCGGGGTGATGAGGTTATTGTGATTGATAATTTTTTTACTGGGAGGAAAGATAATTTGGTTCATTTGTTTGGGAATCCGAGGTTTGAATTGATTAG ACATGATGTTGTTGACCCTATTTTGTTGGAAGTTGATCAGATCTATCACTTGGCTTGTCCTGCTTCTCCGGTTCATTATAAGTACAATCCTGTCAAGACT ATTAAGACGAATGTGATGGGCACACTTAATATGTTGGGTTTGGCAAAGAGGGTAGGGGCGAGGTTTTTGTTAACGAGTACGAGTGAGGTTTATGGCGATC CACTAGAGCATCCGCAGAAGGAGACTTATTGGGGAAATGTGAATCCAATAGGTGAGAGGAGTTGCTATGATGAAGGAAAACGGACTGCAGAAACATTAGC CATGGATTATAATCGAGGTGCAGATGTTGAGGTGCGTATTGCTCGCATTTTTAATACGTACGGGCCTCGCATGTGCTTGGATGATGGACGTGTTGTCAGT AATTTTGTTGCTCAGGCCATCCGCAAACAACCAATGACTGTATATGGTGATGGGAAACAAACTAGGAGCTTCCAATATGTTTCTGATCTGGTTGATGGGC TGGTGGCACTAATGGAAGGCGAGCATGTGGGACCTTTTAACCTTGGCAATCCAGGAGAGTTCACTATGCTAGAGCTCGCAGAGGTTGTCAAAGAGACTAT TGATTCAAGTGCAACAATAGAATTCAGACCCAACACTGCTGATGATCCACATAAGAGGAAACCAGATATCAGCAAAGCAAAGGAGTTGCTGAACTGGGAG CCAAAAATTTCTTTGAGAGAAGGATTGCCTCTCATGGTGAATGACTTCCGGAATCGCATTTTGGAAGGAGATGAAGGGAGAGGGCTTTAA
AA sequence Show only first row Show all	>Potri.006G214000.1 pacid=42767691 polypeptide=Potri.006G214000.1.p locus=Potri.006G214000 ID=Potri.006G214000.1.v4.1 annot-version=v4.1 MMKQLHKQTSVNHRREDEIPTSTQSYTPKTLKHPRSISYIFKEQRFLFILVGILIGSAFFIFQPTLSRLNPSTHSSIPTSIYHRHQDSSSGSSGFASKGS FPGRVPAAIGRKRLRIVVTGGAGFVGSHLVDKLISRGDEVIVIDNFFTGRKDNLVHLFGNPRFELIRHDVVDPILLEVDQIYHLACPASPVHYKYNPVKT IKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYNRGADVEVRIARIFNTYGPRMCLDDGRVVS NFVAQAIRKQPMTVYGDGKQTRSFQYVSDLVDGLVALMEGEHVGPFNLGNPGEFTMLELAEVVKETIDSSATIEFRPNTADDPHKRKPDISKAKELLNWE PKISLREGLPLMVNDFRNRILEGDEGRGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Potri.006G214000 [exp]	0	1
AT4G32120			Galactosyltransferase family p...		Potri.006G257200 [exp]	1.41	0.9462
AT1G50120			unknown protein		Potri.007G071000 [exp]	2.00	0.9538
AT2G21410		VHA-A2	vacuolar proton ATPase A2 (.1)		Potri.002G028600 [exp]	5.19	0.9431
AT3G22290			Endoplasmic reticulum vesicle ...		Potri.006G023900 [exp]	6.48	0.9292
AT5G12260			unknown protein		Potri.001G272400 [exp]	6.92	0.9191
AT3G27320			alpha/beta-Hydrolases superfam...		Potri.008G180600 [exp]	9.48	0.9153
AT5G11710			ENTH/VHS family protein (.1)		Potri.006G234100 [exp]	12.84	0.9358
AT1G53290			Galactosyltransferase family p...		Potri.011G111700 [exp]	13.41	0.9431
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Potri.001G142100 [exp]	13.63	0.9349	UBP20.2
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Potri.016G080500 [exp]	15.49	0.9129

Compare expression of checked genes

Potri.006G214000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.