Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09520 622 / 0 ATEXO70H4 exocyst subunit exo70 family protein H4 (.1) AT3G09530 538 / 0 ATEXO70H3 exocyst subunit exo70 family protein H3 (.1) AT3G55150 537 / 0 ATEXO70H1 exocyst subunit exo70 family protein H1 (.1) AT2G39380 535 / 0 ATEXO70H2 exocyst subunit exo70 family protein H2 (.1) AT5G59730 471 / 3e-159 ATEXO70H7 exocyst subunit exo70 family protein H7 (.1.2) AT1G07725 397 / 1e-130 ATEXO70H6 exocyst subunit exo70 family protein H6 (.1) AT2G28640 391 / 2e-128 ATEXO70H5 exocyst subunit exo70 family protein H5 (.1) AT2G28650 373 / 6e-122 ATEXO70H8 exocyst subunit exo70 family protein H8 (.1) AT5G50380 284 / 1e-86 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT1G72470 266 / 2e-80 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G026900 [exp] 566 / 0 AT5G59730 551 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Potri.001G234600 [exp] 560 / 0 AT2G39380 540 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.008G048700 [exp] 549 / 0 AT2G39380 632 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.010G212400 [exp] 548 / 0 AT2G39380 644 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.003G068700 [exp] 288 / 9e-89 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.012G097100 [exp] 277 / 5e-84 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.001G166400 [exp] 273 / 5e-83 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.015G094800 [exp] 267 / 3e-80 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.016G071000 [exp] 249 / 1e-73 AT5G52340 1021 / 0.0 exocyst subunit exo70 family protein A2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024438 [exp] 690 / 0 AT3G09520 634 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10025291 [exp] 678 / 0 AT3G09520 636 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10005436 [exp] 526 / 2e-180 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10040872 [exp] 509 / 7e-174 AT5G59730 533 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10004917 [exp] 509 / 7e-174 AT5G59730 532 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10015221 [exp] 506 / 1e-172 AT2G39380 533 / 0.0 exocyst subunit exo70 family protein H2 (.1) Lus10040329 [exp] 421 / 9e-140 AT3G55150 488 / 1e-165 exocyst subunit exo70 family protein H1 (.1) Lus10040331 [exp] 415 / 4e-137 AT3G55150 449 / 2e-150 exocyst subunit exo70 family protein H1 (.1) Lus10023452 [exp] 411 / 5e-136 AT3G55150 458 / 2e-154 exocyst subunit exo70 family protein H1 (.1) Lus10023450 [exp] 380 / 3e-124 AT3G55150 445 / 8e-150 exocyst subunit exo70 family protein H1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF03081 [poplar] [flax] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Potri.006G214300.1 pacid=42769791 polypeptide=Potri.006G214300.1.p locus=Potri.006G214300 ID=Potri.006G214300.1.v4.1 annot-version=v4.1 ATGCCGAGAAAAGGTATGAGGAGCATTTGCTTTTCTCCGAAAACGATTTCTTTTTTATCCTCACCTCGTTCTTCACCTTCAAGACTCTCTCTTCCACCAA CTCCCCTTCGGAGTGAATGGATGGTTGAACAGATCATCGAAAATGCCTCATCGTTGATCATGAAATGGAATCCTGAGACATCTGCCTACGCCAATGTCAC CTCTCTTTTTTATGAGAACAGAAGAGAGGCCATGCAGTTCATTAAATGCGTTAACGATTTGCAGAAAGTTATGCATTCGATAGTCTCTGAAGATTCCACC CACTACAGACTCGTACAAGCACAGAATCTAATGCAAATCGCCATGAAGCGGCTTCAAAAGGAGTTTTATCAGATTCTTTCCATGAACCGGGCTCATCTTG ACCCTGAGTCTATGTCTACCAGATCCTCTCGCACCTCTAGATCCAGCATCTCGGATTTTGAAGATGATATCTCACCTGATGATGATGTTCGCGCTGCTAG TGATTCGATCTCCGAAGTTGAACAAGTTTCTTCCATAGCCATGGCAGACTTGAAAGCAATTGCGGAGTGCATGAGTGCAGCTGGGTATGCTAAGGAGTGC GTAAACGTCTACAAAGTTGTTCGAAAATCCATTATCGACGAAGGAATTTATCGCCTTGGGGTAGAAAGAATAAGCTCCTCACGGATCAACAAGATGGACT GGGAAGCCCTTGACATGAGAATCAAGAACTGGTTAGAAGCAATAAAAATTGCAATGAAAACACTCTTCTTCGGAGAGAGATTTCTTTGCGACCACGTGTT TGCCGTCTCTGAATCAATCAGGGAGTCTTGTTTCAGCGAAATATCTAAAGAAGGAGCTACTCTTCTTTTCGGATTCCCGGAACTTGTAGCCAAAAGCAAG AAACCATCATCATCAGACAAAATGTTTCGCGCACTTGACATGTACACAGCAATCTCCGAAAACTGGATAGAGATTGAGTCCATCTTCTCATTCGAGTCCA CCTCTCCCGTGCGCACACAGGCTCTTTCTTCACTCGTCAAACTTAGCGAATCCATTTACTCAATGCTTTCCGATTTTGAATCAAGTGTCCAAAAACACTC TTCAAAAGCATTAGTCCCCGGCGGCGGAGTGCATTCCTTAACAAGCAATGCAATGAACTATCTATCATTACTCGCCGACTATAGCAATGTCCTTACAGAT ATTATCTCCGACTGGCCGCCACCAACGAAACCATCACTACCGGAATCTTACTTCGACAGTCCAGATTCTGATGATCCCCCGGCAGCAGCCATCTCAACAC GGTTTGCTTGGTTGGTTCTTTATCTTTTATGCAAGCTTGATGGCAAAGCAAAATATTACAAAGATGTGTCCCTCTCCTACCTTTTCTTAGCCAACAATTT ACAACATGTAGTATTCAAAGTCCGCACATCAAATCTTCAGTATCTACTCGGTGAAGATTGGATTGTTAAACATGAAGCTAAAGTGGGACAATTTGCAGCA AATTATGAACGGTTAGCATGGGGCAAAGTGTTTGCATCATTACCTGAGAATCCAACGGCGGAGATCTCGCCCGAGGAAGTTAAGGAGACTTTTAAGAGAT TTAATATCAGCTTTGATGAGGCGTGCAGGAAGCAGAGTGCTTGTGTTGTAGCGGACCCCAAACTCCAGGACGAGATTAAGGTTTCTATAGGGAGAAAGAT AACTCCGGTTTATCGCGAGTTTTATGAGAAACATCGGAGTAGTGTTGGAGGGCAGAGACGGGTTGGGGTATTTGTCAAATATGCCCCTGAAGATGTTGAG AATTGCTTATCGCATTTGTTTTTCGGGACAGTTGATTCGGGGAGTTCAGTGTCAACTTCCACAACATCGTCTCGACAGCGGCATCGTGCTTAA
AA sequence Show only first row Show all	>Potri.006G214300.1 pacid=42769791 polypeptide=Potri.006G214300.1.p locus=Potri.006G214300 ID=Potri.006G214300.1.v4.1 annot-version=v4.1 MPRKGMRSICFSPKTISFLSSPRSSPSRLSLPPTPLRSEWMVEQIIENASSLIMKWNPETSAYANVTSLFYENRREAMQFIKCVNDLQKVMHSIVSEDST HYRLVQAQNLMQIAMKRLQKEFYQILSMNRAHLDPESMSTRSSRTSRSSISDFEDDISPDDDVRAASDSISEVEQVSSIAMADLKAIAECMSAAGYAKEC VNVYKVVRKSIIDEGIYRLGVERISSSRINKMDWEALDMRIKNWLEAIKIAMKTLFFGERFLCDHVFAVSESIRESCFSEISKEGATLLFGFPELVAKSK KPSSSDKMFRALDMYTAISENWIEIESIFSFESTSPVRTQALSSLVKLSESIYSMLSDFESSVQKHSSKALVPGGGVHSLTSNAMNYLSLLADYSNVLTD IISDWPPPTKPSLPESYFDSPDSDDPPAAAISTRFAWLVLYLLCKLDGKAKYYKDVSLSYLFLANNLQHVVFKVRTSNLQYLLGEDWIVKHEAKVGQFAA NYERLAWGKVFASLPENPTAEISPEEVKETFKRFNISFDEACRKQSACVVADPKLQDEIKVSIGRKITPVYREFYEKHRSSVGGQRRVGVFVKYAPEDVE NCLSHLFFGTVDSGSSVSTSTTSSRQRHRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09520		ATEXO70H4	exocyst subunit exo70 family p...		Potri.006G214300 [exp]	0	1
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.002G028700 [exp]	6.00	0.9178	VFCYSPRO.1
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088680 [exp]	9.89	0.9076
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088600 [exp]	10.95	0.9069
AT5G36930			Disease resistance protein (TI...		Potri.013G097050 [exp]	15.23	0.9056
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052600 [exp]	17.74	0.9047
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Potri.010G239900 [exp]	18.97	0.9042	Pt-VAMP727.2
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Potri.008G095600 [exp]	26.07	0.8972
AT5G38260			Protein kinase superfamily pro...		Potri.007G125450 [exp]	26.19	0.9032
AT1G80300		ATNTT1	nucleotide transporter 1 (.1)		Potri.001G175200 [exp]	27.49	0.8719	AATP1.1,PtrAATP1
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.019G082400 [exp]	31.46	0.8824

Compare expression of checked genes

Potri.006G214300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.