Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55140 553 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G09540 489 / 1e-173 Pectin lyase-like superfamily protein (.1) AT1G30350 179 / 2e-52 Pectin lyase-like superfamily protein (.1) AT5G55720 175 / 7e-51 Pectin lyase-like superfamily protein (.1) AT3G54920 167 / 7e-47 PMR6 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) AT1G11920 157 / 3e-44 Pectin lyase-like superfamily protein (.1) AT3G27400 154 / 9e-43 Pectin lyase-like superfamily protein (.1) AT2G02720 154 / 2e-42 Pectate lyase family protein (.1) AT5G63180 152 / 6e-42 Pectin lyase-like superfamily protein (.1) AT4G13710 151 / 2e-41 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G080600 [exp] 704 / 0 AT3G55140 554 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G048600 [exp] 549 / 0 AT3G55140 571 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.011G008100 [exp] 169 / 1e-48 AT4G22080 504 / 2e-179 root hair specific 14 (.1) Potri.011G008000 [exp] 168 / 2e-48 AT4G22080 540 / 0.0 root hair specific 14 (.1) Potri.004G007300 [exp] 159 / 5e-45 AT4G22080 489 / 1e-173 root hair specific 14 (.1) Potri.008G148800 [exp] 152 / 7e-42 AT5G15110 523 / 0.0 Pectate lyase family protein (.1) Potri.004G124100 [exp] 152 / 2e-41 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Potri.012G091500 [exp] 150 / 3e-41 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G339500 [exp] 149 / 4e-41 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025290 [exp] 582 / 0 AT3G55140 536 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10024439 [exp] 571 / 0 AT3G55140 534 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10030313 [exp] 535 / 0 AT3G55140 571 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10003307 [exp] 526 / 0 AT3G55140 562 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011258 [exp] 166 / 5e-47 AT1G11920 549 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011257 [exp] 160 / 5e-45 AT1G11920 530 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10018430 [exp] 158 / 3e-44 AT1G11920 525 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10005254 [exp] 152 / 9e-42 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10014887 [exp] 150 / 3e-41 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10036946 [exp] 149 / 8e-41 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00544 [poplar] [flax] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Potri.006G214400.1 pacid=42768714 polypeptide=Potri.006G214400.1.p locus=Potri.006G214400 ID=Potri.006G214400.1.v4.1 annot-version=v4.1 ATGGGAAACTCCCATGCTCATGGTCATCACCGCAAGTTCCGTAATAATGGAAACGTCCCTTCCCCCGATAAAACTGCTTCTGCTCCTTCACCATCACAAC CTGTACCGCCCTCTATTTATCAACCCGAACACCCTCTTATTCCCAACTCATCAATCCACGCATCCTACATGGCTACCTCTTTGCCTTACTCTCATGTCGA CTCTGCCTTGCGTGCTCTTGCTGCCCAGGCCGAGGGGTTCGGTCGCTGTGCCATTGGTGGCCTCCATGGGCCCATTTATTATGTCACCACTTTATTGGAT GATGGCCCTGGATCACTTAGAGACGGATGTCGGAAAAAAGAGCCACTTTGGATTGTCTTTGAAGTATCAGGCACCATTCAGCTTGGATCTTACTTGAATG TCTCGTCTTATAAAACCATTGATGGCCGGGGTCAAAGAATAAAACTTACAGGCAAGGGTTTGAGACTGAAGGAATGCGAGCATGTTATTATATGCAATCT AGAGTTTGAAGGTGGTAGAGGACCTGATGTTGATGGCATTCAGATAAAACCCAAGTCAAAGCATATATGGATAGACCGTTGCAGCCTTCGTGACTATGAT GATGGGCTGATAGATATCAACCGAGAAAGCACAGATATTACTGTTTCTAGGTGTCACTTTGCACAACATGATAAAACGATACTCATTGGAGCAGATCCTA CTCATGTTGGTGACAGATGTATTCGAGTAACCATTCACCATTGCTTTTTTGATGGAACACGGCAACGCCATCCTCGTGTTAGATTTGGAAAAGTACATTT ATACAATAACTACATCAGAAACTGGGGCATTTATGCTGTTTGCGCCAGTGTAGAGTCACAGATATACTCCCAATGCAACATATATGAAGCAGGACAGAAG AAGATTGCATTTAAGTATCTCTCTGAGAAGGCAGCTGACAAGGAGGAAGCAAGTAGTGGCTGCATAAGGTCTGAAGGAGACTTATTTGTTATTGGAGCTC AAGCAGGGTTAATGGCTGAGGACGGTGAATTCTGTATGTTTCATCCCAGTGAATATTACCCCACATGGACAATAGAACCTCCTACAGATAGTCTTAAACA GGTTCTCCAGCATTGTACAGGATGGCAGTGTGTTCCACGGCCAGCTGATCATCCATTAGCTGCACAGTGA
AA sequence Show only first row Show all	>Potri.006G214400.1 pacid=42768714 polypeptide=Potri.006G214400.1.p locus=Potri.006G214400 ID=Potri.006G214400.1.v4.1 annot-version=v4.1 MGNSHAHGHHRKFRNNGNVPSPDKTASAPSPSQPVPPSIYQPEHPLIPNSSIHASYMATSLPYSHVDSALRALAAQAEGFGRCAIGGLHGPIYYVTTLLD DGPGSLRDGCRKKEPLWIVFEVSGTIQLGSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPKSKHIWIDRCSLRDYD DGLIDINRESTDITVSRCHFAQHDKTILIGADPTHVGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYIRNWGIYAVCASVESQIYSQCNIYEAGQK KIAFKYLSEKAADKEEASSGCIRSEGDLFVIGAQAGLMAEDGEFCMFHPSEYYPTWTIEPPTDSLKQVLQHCTGWQCVPRPADHPLAAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55140			Pectin lyase-like superfamily ...		Potri.006G214400 [exp]	0	1
AT1G50000			methyltransferases (.1.2)		Potri.001G290100 [exp]	3.16	0.8035
AT1G09190			Tetratricopeptide repeat (TPR)...		Potri.005G019400 [exp]	7.93	0.7697
AT3G15930			Pentatricopeptide repeat (PPR)...		Potri.001G464200 [exp]	9.48	0.7913
AT2G38610			RNA-binding KH domain-containi...		Potri.006G111400 [exp]	15.09	0.6041
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.002G220300 [exp]	16.73	0.7463
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.017G141200 [exp]	18.02	0.7632
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.004G125500 [exp]	18.65	0.7672
AT2G44850			unknown protein		Potri.002G137300 [exp]	21.21	0.7589
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Potri.016G119500 [exp]	25.09	0.6988
AT4G02405			S-adenosyl-L-methionine-depend...		Potri.002G203900 [exp]	25.98	0.7138

Compare expression of checked genes

Potri.006G214400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.