Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07710 566 / 0 Ankyrin repeat family protein (.1) AT5G60070 553 / 0 ankyrin repeat family protein (.1) AT5G02620 544 / 0 ATANK1, ANK1 ankyrin-like1 (.1) AT2G31820 451 / 2e-152 Ankyrin repeat family protein (.1) AT1G05640 426 / 4e-143 Ankyrin repeat family protein (.1) AT3G12360 337 / 7e-109 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT3G09550 321 / 1e-102 Ankyrin repeat family protein (.1) AT2G01680 311 / 2e-99 Ankyrin repeat family protein (.1) AT1G34050 109 / 4e-25 Ankyrin repeat family protein (.1) AT2G24600 106 / 3e-24 Ankyrin repeat family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G080700 [exp] 844 / 0 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 607 / 0 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 602 / 0 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069400 [exp] 560 / 0 AT1G07710 676 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 448 / 4e-151 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 443 / 7e-150 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 332 / 5e-107 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 328 / 2e-106 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 330 / 3e-106 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024440 [exp] 666 / 0 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10025289 [exp] 658 / 0 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 569 / 0 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 567 / 0 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 458 / 2e-155 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10025287 [exp] 390 / 4e-133 AT1G07710 403 / 2e-138 Ankyrin repeat family protein (.1) Lus10027074 [exp] 353 / 2e-117 AT2G31820 626 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 333 / 2e-107 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10023460 [exp] 330 / 2e-106 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10015037 [exp] 327 / 6e-105 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.006G214600.3 pacid=42767626 polypeptide=Potri.006G214600.3.p locus=Potri.006G214600 ID=Potri.006G214600.3.v4.1 annot-version=v4.1 ATGGAACCTCCGGCGAGGCAGCAAATTTCCCGGCAGAAGAAGATGACAAAACAGTTGACTGGGAAACGGGATGACACGCCGTTTCATGCGGTGGTGAGAG CTGGGAATTTGAAGCTGGTTAAGGAAATGGTAGCTGAGAATCTTGGAGAAGCTGCAGAGTTGACTGTGATGTTGTCGAAACAGAACCAATCAGGAGAAAC TGCTTTATATGTTGCTTCAGAGTATTCGCATGTTGATATAGTGAAGGAGCTGATTAAGTACTATGACACTGGTTTGGCTAGTCTAAAAGCAAGAAATGGG TATGATACTTTTCACATAGCTGCCAAGCAAGGTGATTTGGAGATAGTGAAAGTTCTCATGGAGGTCGATCCTGAACTTTCTTTGACCTTTGATTCATCAA ACACTACAGCTTTGCACTCTGCTGCCTCACAAGGGCATGTTGAAGTAGTGAATTTTTTGTTAGAGAAATGCAGTGGCCTCGCTTTGATAGCAAAAAGTAA TGGTAAAACTGCCTTGCATTCGGCAGCAAGGAATGGACATTTGGAGATTTTGAAAGCCCTTTTAAGCAAAGAACCTGGACTCGTGATTAAGATTGATAAG AAAGGCCAGACAGCTCTCCATATGGCAGTTAAGGGACAGACTGTTGAGCTGGTGGAGGAGCTGATCATGTCAGATCCTTCTTTGATGAACATGGTTGATA ATAAAGGCAACTCTGCTTTGCATATTGCAGTACGTAAGGGTAGAGATCAGATCGTTAGGAAGCTACTTGACCAACAGGGAATTGACAAAACAATTGTCAA CAGATCCAGAGAAACCCCCTTCGATATTGCTGAGAAAAATGGCCACAGAGGAATTGCCTCCATCTTAGAAGAACATGGAGTCTTATCTGCCAAATCCATG AAGCCTACAACTAAAACAGCCAACCGAGAACTAAAGCAAACTGTAAGTGACATAAAGCACGGGGTTCACAATCAGCTTGAGACCACACGGCTAACACGAA AACGTGTTCAAGGTATAGCCAAGAGGCTCAACAAAATGCACACTGAAGGTCTCAACAATGCGATTAACTCAACCACAGTTGTTGCAGTCCTTATTGCCAC TGTTGCGTTTGCTGCCATCTTCCAGCTCCCTGGCCAGTTTGTTGATAACCCAGATAACCTCGCACCCGGACAGTCTGCTGGAGAAGCGAAAATTGCTCCC AAACCCGAGTTCATGATTTTCATCATATTTGACTCTATTGCTCTCTTTATATCATTGGCTGTAGTGGTGGTTCAAACTTCTATCGTTGTTATAGAGAGAA AGGCAAAAAAACAACTAATGTCCGTGATCAACAAGCTAATGTGGTTGGCTTGTGTGCTGATTTCAGTTGCATTCCTTGCACTCTCATACGTTGTTGTGGG AGATGATGAGAAGTGGTTGGCACTATCTGTAACAGTCATAGGGACAATAATCATGGTAACAACAATTGGGACGATGGGTTATTGGGTAATTGTACAGAGA ATTGAGACTTCCAAATTACGGAGATCATTAACAAGTAGGTCACGATCAGAGTCGATGTCATTCATGGAAGAATCAGAGATTCTGGAAAATGACTTCAAGA AACTCTATGCAATTTGA
AA sequence Show only first row Show all	>Potri.006G214600.3 pacid=42767626 polypeptide=Potri.006G214600.3.p locus=Potri.006G214600 ID=Potri.006G214600.3.v4.1 annot-version=v4.1 MEPPARQQISRQKKMTKQLTGKRDDTPFHAVVRAGNLKLVKEMVAENLGEAAELTVMLSKQNQSGETALYVASEYSHVDIVKELIKYYDTGLASLKARNG YDTFHIAAKQGDLEIVKVLMEVDPELSLTFDSSNTTALHSAASQGHVEVVNFLLEKCSGLALIAKSNGKTALHSAARNGHLEILKALLSKEPGLVIKIDK KGQTALHMAVKGQTVELVEELIMSDPSLMNMVDNKGNSALHIAVRKGRDQIVRKLLDQQGIDKTIVNRSRETPFDIAEKNGHRGIASILEEHGVLSAKSM KPTTKTANRELKQTVSDIKHGVHNQLETTRLTRKRVQGIAKRLNKMHTEGLNNAINSTTVVAVLIATVAFAAIFQLPGQFVDNPDNLAPGQSAGEAKIAP KPEFMIFIIFDSIALFISLAVVVVQTSIVVIERKAKKQLMSVINKLMWLACVLISVAFLALSYVVVGDDEKWLALSVTVIGTIIMVTTIGTMGYWVIVQR IETSKLRRSLTSRSRSESMSFMEESEILENDFKKLYAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07710			Ankyrin repeat family protein ...		Potri.006G214600 [exp]	0	1
AT2G30020			Protein phosphatase 2C family ...		Potri.001G278500 [exp]	2.82	0.8132
AT2G46060			transmembrane protein-related ...		Potri.014G087300 [exp]	7.74	0.7637
AT2G46080			unknown protein		Potri.008G085600 [exp]	18.65	0.7876
AT4G38260			Protein of unknown function (D...		Potri.004G206300 [exp]	19.89	0.7735
AT5G10380		ATRING1, RING1	RING/U-box superfamily protein...		Potri.007G097500 [exp]	22.80	0.7690
AT3G48990			AMP-dependent synthetase and l...		Potri.001G105900 [exp]	28.89	0.7685
AT5G46020			unknown protein		Potri.004G051100 [exp]	30.59	0.7574
AT3G03560			unknown protein		Potri.013G073400 [exp]	30.93	0.7475
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Potri.002G104400 [exp]	31.14	0.7491
AT1G07870			Protein kinase superfamily pro...		Potri.009G026500 [exp]	33.16	0.6962

Compare expression of checked genes

Potri.006G214600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.