Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09560 845 / 0 ATPAH1 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3) AT5G42870 458 / 7e-147 ATPAH2 phosphatidic acid phosphohydrolase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G081000 [exp] 1487 / 0 AT3G09560 870 / 0.0 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3) Potri.014G031000 [exp] 405 / 1e-125 AT5G42870 468 / 1e-148 phosphatidic acid phosphohydrolase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025284 [exp] 990 / 0 AT3G09560 946 / 0.0 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3) Lus10009064 [exp] 951 / 0 AT3G09560 894 / 0.0 PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1, Lipin family protein (.1.2.3) Lus10021733 [exp] 368 / 4e-112 AT5G42870 432 / 5e-136 phosphatidic acid phosphohydrolase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04571 [poplar] [flax] Lipin_N lipin, N-terminal conserved region CL0137 [poplar] [flax] HAD PF08235 [poplar] [flax] LNS2 LNS2 (Lipin/Ned1/Smp2) CL0137 [poplar] [flax] PF16876 [poplar] [flax] Lipin_mid Lipin/Ned1/Smp2 multi-domain protein middle domain
Representative CDS sequence Show only first row Show all	>Potri.006G214800.2 pacid=42768120 polypeptide=Potri.006G214800.2.p locus=Potri.006G214800 ID=Potri.006G214800.2.v4.1 annot-version=v4.1 ATGAATGTTGTTGGGAAAGTGGGTAGTTTAATTTCGCAAGGTGTAAACTCGGTGGCAACCCCTTTTCATCCCTTCGGTGGGGCTGTTGATGTTATTGTGG TACAACAGCAAGACGGGACATTTCGAAGTACCCCATGGTATGTTCGATTTGGCAAATTTCAGGGTGTTCTTAAGAGAGCTGAGAAGATTGTCCGCATAAA CGTCAATGGTGTTGAAGCTAATTTTCACATGTATCTTGATAATTCTGGAGAAGCTTATTTCATAAAGGAGGTTGAGCCTGGTAAAGGAAGTGAGGCAAAT GGGGTAATAAAGGATTCTGATAGCATGGCAATGTCGAATGAAGATGTCAGTGTTGGTTTTAGTGATGTTGTTGATAATAACGTTGTTGGAATTTCTAGGC TTGAGCATAGTGTTTCCGATTCTAGGGTGATTCAGCTGCGAGAGGAAGATGATTCATCGGGTGCAGCACGACTTCAGAGGGCAGAATCTGATGGTGACCG GAGGTATTATGATCTTGAAGATGAGCAACCCTCTCTGGATGATTCAGTTGAGTTATCAGAGTATGGTTCTAACAGATATGACGGTTTGGATGGCGAGCAT CCTGCAGTTTCACAACGTTCACATTCAGAAGTGATCCTGGTGAGTGTGGATGGTCATGTTCTGACAGCCCCTGTATTGGAATCAGAACAAAATACCGAGA ATGTGCAATTATGCACCCCTCAGTTCCATCTGGGCCGAGGTGATGACACCGAGGAGTTTAATTCAGGTGATGATTCATGGGCTGCTAATTACATCAATAC GCTGAATGCATCTACATCAAATGTTGCATCTGATAATGCTTACAGTGCAAGTAATGGTGATAACATTTGCCAACCAGAGGTTTGTGAGGGTGATGAGGAA CATGCATGTCAAGGTCAAGAAATTCAGGACATTTCTAGATCAGAAGGAGATCTTCTGGCACAAAGCGATTCAGATACATCTGTTAGGATAAACAGGGAAG ATATTTTCAAAAGCTGCTCGGCGTTACCAGAATGGGCCAAACAGGCTGGAATTGTTGATCTTGAGGAAATGGATTCTTCACTTGAGGTGCAAAAAGATTC ACGTGAGGAGTCTCCTTGTAGTCCTCCAGCAGCTGATCAAACTACTGATGGGGATTTTGGTGAATTCACAGACAATGGCTGTAATGCTAATGGACTTCAT GGGTCACCTACTTTGCTGGTTGAACTCGAAGCAACAGATAAAAATGCTTCGAGGACAGAACATTTAGGTGCTGACAGCACTTGTATTTCTGTTAGCATTG TTAACAGTTCAGATGAGAAGGGTGAAGAGTCTGATCACATATCTACAGTGTGTGATGGGTCAAATAGCAGTTTGCATAGACCTGTTCCCAAAGATGAGTC AAGTAAAAGCGAGACTGTGGAACTGCAGAGAGCAATCTCCATTGAAGAGATGCAAACTTGTTCAAGCAAAGGGTTTGAGATCTCCCTCTGTGGGAAGGAA CTCCATGCAGGTATGGGCTTGGACGCTGCTGCTGAAGTGTTTGCAGCACATTGTGTATCTGCTGCGGAATTTAAAAATTCTGCAACGTCAATTATCAAGA ATGAAAACTTAATAATCAGATATGGACAAAAGTACTTCCCGTGGGAAAAGGCTGCTCCTATTGTGCTTGGAATGGTAGCATTTGGTTTGGATTTACCTGC TGAGCCCAAAGATGCCATTCCTGTGGAACTGGATGAAACAGTTGCACAAAGGGATGATGATGCTGTGATTAGTTCCGCATCATCTAGCCGCATATGGAGG CTTTGGCCTATTCCATTTAGAAGGGTCCAGATAAGCAGAGAATCATCAAGTGAAGAGTTATTTGTTGATTCTGAATCTGGAGTGCAAAACACAAATGTTG AATCAACTTCAGCATCCCACGGTGGTTCTGTGTCTCCTCACAAGCAGTTTATAAGGACAAATCTTCCAACTAGTGAGCAGATAGCATCATTGAATCTGAA AGATGGTCAAAATATGATAACTTTCAGTTTCTCAACTAGGGTTCTGGGTACACAACAGGTCGATTGTCATATCTACTTGTGGAAGTGGAATGCAAGAATT GTAATTTCAGATGTGGATGGAACAATTACCAAGTCTGATGTTTTGGGTCAGTTCATGCCCTTGGTTGGAAAGGACTGGACACAATCTGGAGTAGCTAAAC TTTTTTGTGCCATTAAGGAGAATGGATATCAGCTATTGTTTCTGAGTGCACGTGCAATTGTTCAGGCATATTTAACCAGAAGTTTTCTTTTCAACGTAAA GCAGGATGGAAAAACCCTACCAAATGGACCTGTTGTTATTTCACCTGATGGATTGTTTCCCTCATTATACCGAGAAGTAATAAGAAGAGCTCCTCATGAG TTCAAGATTGCGTGCTTAGAGGATATTAAAAGACTCTTTCCTACTGATTGCAACCCATTCTATGCGGGCTTCGGAAATAGAGATACCGATGAGCTTAGTT ACCGAAAAATTGGGATCCCTAAGGGCAAAATATTTATTATAAACCCAAAGGGTGAGGTGGCCATTAGTCATCGCATCGATGTGAAATCCTACACATCTTT ACACACGCTGGTCGATGATATGTTCCCCCCTACATCGTTAGCCGAGCAGGAAGATTATAACTCATGGAATTTTTGGAAAGTGCCACTGCCAGATATTGAG ATTTAG
AA sequence Show only first row Show all	>Potri.006G214800.2 pacid=42768120 polypeptide=Potri.006G214800.2.p locus=Potri.006G214800 ID=Potri.006G214800.2.v4.1 annot-version=v4.1 MNVVGKVGSLISQGVNSVATPFHPFGGAVDVIVVQQQDGTFRSTPWYVRFGKFQGVLKRAEKIVRINVNGVEANFHMYLDNSGEAYFIKEVEPGKGSEAN GVIKDSDSMAMSNEDVSVGFSDVVDNNVVGISRLEHSVSDSRVIQLREEDDSSGAARLQRAESDGDRRYYDLEDEQPSLDDSVELSEYGSNRYDGLDGEH PAVSQRSHSEVILVSVDGHVLTAPVLESEQNTENVQLCTPQFHLGRGDDTEEFNSGDDSWAANYINTLNASTSNVASDNAYSASNGDNICQPEVCEGDEE HACQGQEIQDISRSEGDLLAQSDSDTSVRINREDIFKSCSALPEWAKQAGIVDLEEMDSSLEVQKDSREESPCSPPAADQTTDGDFGEFTDNGCNANGLH GSPTLLVELEATDKNASRTEHLGADSTCISVSIVNSSDEKGEESDHISTVCDGSNSSLHRPVPKDESSKSETVELQRAISIEEMQTCSSKGFEISLCGKE LHAGMGLDAAAEVFAAHCVSAAEFKNSATSIIKNENLIIRYGQKYFPWEKAAPIVLGMVAFGLDLPAEPKDAIPVELDETVAQRDDDAVISSASSSRIWR LWPIPFRRVQISRESSSEELFVDSESGVQNTNVESTSASHGGSVSPHKQFIRTNLPTSEQIASLNLKDGQNMITFSFSTRVLGTQQVDCHIYLWKWNARI VISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFCAIKENGYQLLFLSARAIVQAYLTRSFLFNVKQDGKTLPNGPVVISPDGLFPSLYREVIRRAPHE FKIACLEDIKRLFPTDCNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVAISHRIDVKSYTSLHTLVDDMFPPTSLAEQEDYNSWNFWKVPLPDIE I

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Potri.006G214800 [exp]	0	1
AT5G66810			unknown protein		Potri.005G137100 [exp]	1.41	0.8595
AT1G50620			RING/FYVE/PHD zinc finger supe...		Potri.001G358900 [exp]	1.73	0.8862
AT4G13630			Protein of unknown function, D...		Potri.002G242900 [exp]	3.46	0.8586
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Potri.016G096400 [exp]	6.48	0.8503
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.010G237100 [exp]	6.70	0.8291
AT5G13950			unknown protein		Potri.014G144100 [exp]	7.07	0.8580
AT3G62200			Putative endonuclease or glyco...		Potri.005G003800 [exp]	8.00	0.8282
AT1G48110		ECT7	evolutionarily conserved C-ter...		Potri.010G152300 [exp]	9.00	0.8589
AT1G36370		SHM7	serine hydroxymethyltransferas...		Potri.001G212000 [exp]	10.58	0.8417	SHMT9
AT5G64270			splicing factor, putative (.1)		Potri.017G050800 [exp]	11.48	0.8357

Compare expression of checked genes

Potri.006G214800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.