Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45850 47 / 2e-07 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 42 / 1e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G082400 [exp] 100 / 4e-26 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G233700 [exp] 51 / 7e-09 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 50 / 1e-08 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018120 [exp] 46 / 3e-07 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 42 / 9e-06 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G215932.1 pacid=42768484 polypeptide=Potri.006G215932.1.p locus=Potri.006G215932 ID=Potri.006G215932.1.v4.1 annot-version=v4.1 ATGGAAACAATAGCAACCAACCATATTGATGCACATAAGAACATCCGTTCCATTGGGATTCCTTCTTCTGAGGATATGAAAGGATTGAGAAGCAATCGCT ACCACTCAATTCTTAAGATCAAGGAAGCTGGACGATGTTTTGTGTATGAATACAAGGTGGATAAGCCTTATTGTTTGCCACTTGAAAAGGGACCGTCTAA TACACCAGCACGGAATCTATTGAAGAATTCAGAAAACCCACATTTCAAAAGTTGA
AA sequence Show only first row Show all	>Potri.006G215932.1 pacid=42768484 polypeptide=Potri.006G215932.1.p locus=Potri.006G215932 ID=Potri.006G215932.1.v4.1 annot-version=v4.1 METIATNHIDAHKNIRSIGIPSSEDMKGLRSNRYHSILKIKEAGRCFVYEYKVDKPYCLPLEKGPSNTPARNLLKNSENPHFKS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45850			P-loop containing nucleoside t...		Potri.006G215932 [exp]	0	1
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.002G173900 [exp]	5.83	0.8130
AT2G42560			late embryogenesis abundant do...		Potri.013G118600 [exp]	6.24	0.8265
AT4G22165			F-box family protein with a do...		Potri.004G137700 [exp]	12.48	0.7519
AT5G05340			Peroxidase superfamily protein...		Potri.014G143200 [exp]	18.57	0.7450	Pt-PRX1.11
					Potri.001G073166 [exp]	23.62	0.7234
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.004G033100 [exp]	31.84	0.7183	MYB.53
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.011G076500 [exp]	31.93	0.7144
AT2G04220			Plant protein of unknown funct...		Potri.005G068100 [exp]	32.86	0.7029
AT2G41810			Protein of unknown function, D...		Potri.006G050400 [exp]	34.46	0.7095
					Potri.010G072200 [exp]	34.98	0.7111

Compare expression of checked genes

Potri.006G215932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.