Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58090 132 / 2e-38 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G189600 [exp] 41 / 0.0002 AT5G22760 879 / 0.0 PHD finger family protein (.1) Potri.009G150200 [exp] 41 / 0.0002 AT5G22760 855 / 0.0 PHD finger family protein (.1) Potri.009G049100 [exp] 40 / 0.0003 AT5G12400 1084 / 0.0 DNA binding;zinc ion binding;DNA binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025274 [exp] 146 / 3e-45 AT3G58090 115 / 5e-32 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10009074 [exp] 108 / 1e-30 AT3G58090 97 / 8e-26 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10009383 [exp] 45 / 1e-05 AT5G22760 714 / 0.0 PHD finger family protein (.1) Lus10020532 [exp] 45 / 1e-05 AT5G22760 731 / 0.0 PHD finger family protein (.1) Lus10014918 [exp] 41 / 0.0003 AT5G12400 1062 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Lus10027346 [exp] 40 / 0.0004 AT5G12400 1029 / 0.0 DNA binding;zinc ion binding;DNA binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G216000.1 pacid=42767212 polypeptide=Potri.006G216000.1.p locus=Potri.006G216000 ID=Potri.006G216000.1.v4.1 annot-version=v4.1 ATGGATAACACAAGCAAAGAGCTAGAATTGGAGTCTTTACCAACAGGGGTTTTCGAGTTACCGGGAGAGCCTGCGATAGTAATTAATGGCGTGCCAGACA TCTCTCCGAGTGATGCTGCTCTTGTTCTCTCAAGTACGTGTGGAATTACAAGTCAAAATGCAGATTTTTTCAGAGATTCGAGTTTCGGTGAATGGTTGGA AGGAAGAGAGGTTCGGAAATTGTTCGGAGAGAGCTATTTTAGCGGTACTGTGTCTCTGTTCGATAAGGAAACTGGCTGGTACAGGGTGGTGTATGAAGAT GGTGATTCCGAAGAACTTGACTGGAAAGAGTTGCAAGAGGTCCTTCTGCCTCTTGATATTACAGTTCCACTGAAGTCACTAGCACAGAAGATTATCAAGA AGAACCAGAAGACTGTAATTCACAAATCAGTAAAAAGTGCAACCCGCCCACGAATTACCAAAGCTACAATTTCAGGAACTTTAGAGAAAGAAAACTTGAC GGACACATAG
AA sequence Show only first row Show all	>Potri.006G216000.1 pacid=42767212 polypeptide=Potri.006G216000.1.p locus=Potri.006G216000 ID=Potri.006G216000.1.v4.1 annot-version=v4.1 MDNTSKELELESLPTGVFELPGEPAIVINGVPDISPSDAALVLSSTCGITSQNADFFRDSSFGEWLEGREVRKLFGESYFSGTVSLFDKETGWYRVVYED GDSEELDWKELQEVLLPLDITVPLKSLAQKIIKKNQKTVIHKSVKSATRPRITKATISGTLEKENLTDT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58090			Disease resistance-responsive ...		Potri.006G216000 [exp]	0	1
AT4G12040		AtSAP7	stress-associated protein 7, A...		Potri.007G078500 [exp]	1.73	0.8158
AT4G13520		SMAP1	small acidic protein 1 (.1)		Potri.008G174000 [exp]	4.00	0.8123
AT5G23590			DNAJ heat shock N-terminal dom...		Potri.009G138100 [exp]	4.24	0.7658
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Potri.011G154800 [exp]	7.74	0.7838	LSD1.2
AT4G16530			Family of unknown function (DU...		Potri.001G123200 [exp]	9.38	0.7659
AT2G06025			Acyl-CoA N-acyltransferases (N...		Potri.006G142100 [exp]	12.60	0.6988
AT2G04230			FBD, F-box and Leucine Rich Re...		Potri.004G020200 [exp]	12.72	0.7836
AT2G48150		ATGPX4	glutathione peroxidase 4 (.1)		Potri.014G138800 [exp]	14.83	0.7330	GPX4.1,PtrcGpx4
AT2G46900			unknown protein		Potri.014G109500 [exp]	15.19	0.7330
					Potri.017G061800 [exp]	16.97	0.7400

Compare expression of checked genes

Potri.006G216000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.