Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37310 723 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 385 / 1e-124 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 379 / 2e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 373 / 1e-119 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G12770 363 / 7e-117 MEF22 mitochondrial editing factor 22 (.1) AT2G22410 354 / 1e-113 SLO1 SLOW GROWTH 1 (.1) AT4G18750 356 / 3e-112 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 351 / 5e-112 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 350 / 1e-110 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 347 / 2e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044700 [exp] 387 / 1e-125 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G019500 [exp] 378 / 6e-123 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.004G217900 [exp] 375 / 1e-121 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.003G031600 [exp] 369 / 2e-118 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 367 / 3e-116 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 363 / 4e-115 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G085500 [exp] 360 / 6e-115 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.018G071800 [exp] 358 / 6e-115 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G086200 [exp] 358 / 2e-114 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025273 [exp] 751 / 0 AT2G37310 635 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 388 / 4e-126 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 382 / 2e-123 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 359 / 9e-114 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028593 [exp] 353 / 5e-113 AT5G16860 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 356 / 6e-113 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10007806 [exp] 353 / 4e-111 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 345 / 3e-110 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 349 / 2e-109 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 342 / 1e-106 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G216100.1 pacid=42767774 polypeptide=Potri.006G216100.1.p locus=Potri.006G216100 ID=Potri.006G216100.1.v4.1 annot-version=v4.1 ATGTGGCGCAATAAAATATCAAACACCTTCACCAATGGCCAATACGACTATCTCTTATACGGTCGTCTGTTCAAGTATTTTACAGACAACCGTCTTCCTC TCCAAGCCAAACAACTTCACGCACGCCTCCTACTCTCTTCATCAACGCTTGACAACTACCTCGGTGCGAGACTCATCAATTTATACTCGAAAACCAAACA CATCCACCACGCACGCCATGTGTTCGATCAGATTCCCCATAAAAACACCTTCTCTTATAACGCCTTGTTAATTGCTTACACTATGAACAACCACCATAAA GAGACAATAAACTTGTTTTCTTCATTGTTATTGTCTTCTTCTGGGGATTTACAACCCAATAATTATTCGATAACGTGCCTTTTGAAGTCGTTATCGAGCT TGTTGATGGTTACCGATGTTTGTTTGGGTAAGGAGATTCATTGTTTTGTTTTGAGACGTGGGCTTGTTGAGGATGTTTTCGTAGAGAATGCTTTGATTAG TTTTTACTCGAAATGTTTAGGTGTGGGTTTTGCGAGGAAATTGTTTGATAAAATGCGTGAGAGAGATGTTGTCACGTGGAATTCGATGATTGCTGGGTAT GCACAAGCTGGGTTTTTTAAGGAATGCAAAGAGTTATATAGAGAAATGGGAGCGCTCCCCGGGTTTAAGCCTAATGCAGTTACGGTGCTTAGTGTCTTAC AAGCGTGCATGCAGTCGCAGGATCTTGTTTTTGGGATGGAAGTTCATAGGTATATAGTTGATAATAAGGTTGAATTGGATGTTTTGGTCTGTAATGCATT GATTGGACTGTATGCGAAGTGTGGGAGTTTGGATTATGCAAGGGAGTTGTTCGATGAGATGAGTGAGAAAGATGAGGTGACTTACGGCGCGATTATATCA GGTTATATGGCTCATGGTGTTGTTGATAAAGGGATGGAGCTTTTTAGGGAAATGAAAAGTCGAGTATTGAGCACGTGGAATGCAGTGATTTCCGGTTTGG TGCAAAATAACCGGCACGAAGGGGTTGTAGATCTGGTAAGAGAAATGCAGGGGCTTGGTTTTAGGCCTAATGCTGTAACACTTTCAAGCGTACTTCCTAC TCTATCGTATTTTTCGAATTTGAAAGGAGGGAAAGAGATACATGGTTATGCAGTTAAAAATGGTTATGACAGGAATATATACGTTGCGACTGCAATTATT GATACTTATGCAAAGCTGGGATTTCTTTTTGGGGCTCAGTATGTTTTTGATCAATCAAAAGAGAGGAGCTTGATTATTTGGACTGCAATAATCTCTGCAC ATGCTGCCCATGGTGATGCTAATTCAGCTCTTACTTTTTTTGATGAGATGTTGAGTAATGGAATACAGCCAGACCATGTAACATTCACTGCAGTGTTAGC TGCATGTGCTCATTGTGGAATGGTGGATAAAGCTTGGGAGATTTTCAATTCCATGTCTAAGAAATATGGCATTCAGCCTTTAGGAGAGCATTATGCTTGC ATGGTTGGTGTTCTGGGCAGGGCGGGCAGGCTCTCTCAAGCGACAGAATTTATTTCTACTATGCCAATTGAACCAAATGCAAAAGTTTGGGGTGCATTGC TCCATGGAGCTTCACTTTGTGTTGATGTTGAACTTGGGAAGTTTGCCTGTGATCATTTGTTTGAAATTGAACCTGAAAATACTGGCAATTATGCCATCAT GGCAAATTTATATTCTCAGGCAGGGAAATGGAAAGAGGCTGATGAGGTTAGAGAAAGAATGATTCAATGTGGTTTGAAGAAGATCCCAGGCAGTAGTTGG ATAGAGACTAGTAATGGGTTATAA
AA sequence Show only first row Show all	>Potri.006G216100.1 pacid=42767774 polypeptide=Potri.006G216100.1.p locus=Potri.006G216100 ID=Potri.006G216100.1.v4.1 annot-version=v4.1 MWRNKISNTFTNGQYDYLLYGRLFKYFTDNRLPLQAKQLHARLLLSSSTLDNYLGARLINLYSKTKHIHHARHVFDQIPHKNTFSYNALLIAYTMNNHHK ETINLFSSLLLSSSGDLQPNNYSITCLLKSLSSLLMVTDVCLGKEIHCFVLRRGLVEDVFVENALISFYSKCLGVGFARKLFDKMRERDVVTWNSMIAGY AQAGFFKECKELYREMGALPGFKPNAVTVLSVLQACMQSQDLVFGMEVHRYIVDNKVELDVLVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIIS GYMAHGVVDKGMELFREMKSRVLSTWNAVISGLVQNNRHEGVVDLVREMQGLGFRPNAVTLSSVLPTLSYFSNLKGGKEIHGYAVKNGYDRNIYVATAII DTYAKLGFLFGAQYVFDQSKERSLIIWTAIISAHAAHGDANSALTFFDEMLSNGIQPDHVTFTAVLAACAHCGMVDKAWEIFNSMSKKYGIQPLGEHYAC MVGVLGRAGRLSQATEFISTMPIEPNAKVWGALLHGASLCVDVELGKFACDHLFEIEPENTGNYAIMANLYSQAGKWKEADEVRERMIQCGLKKIPGSSW IETSNGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37310			Pentatricopeptide repeat (PPR)...		Potri.006G216100 [exp]	0	1
AT2G33680			Tetratricopeptide repeat (TPR)...		Potri.006G053100 [exp]	1.00	0.9560
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	2.00	0.9482
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	4.47	0.9560
AT5G61370			Pentatricopeptide repeat (PPR)...		Potri.012G068400 [exp]	4.58	0.9484
AT2G03880		REME1	required for efficiency of mit...		Potri.004G208000 [exp]	4.58	0.9445
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.010G035700 [exp]	5.00	0.9469
AT3G15930			Pentatricopeptide repeat (PPR)...		Potri.003G031600 [exp]	5.65	0.9439
AT5G06400			Pentatricopeptide repeat (PPR)...		Potri.006G200800 [exp]	6.92	0.9402
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.001G369900 [exp]	7.07	0.9408
AT5G40410			Tetratricopeptide repeat (TPR)...		Potri.002G014800 [exp]	8.24	0.9352

Compare expression of checked genes

Potri.006G216100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.