Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37300 55 / 4e-09 ABCI16 ATP-binding cassette I16, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G082700 [exp] 206 / 9e-65 AT2G37300 71 / 1e-14 ATP-binding cassette I16, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025272 [exp] 57 / 1e-09 AT2G37300 69 / 7e-15 ATP-binding cassette I16, unknown protein Lus10009075 [exp] 52 / 5e-08 AT2G37300 68 / 9e-15 ATP-binding cassette I16, unknown protein Lus10034158 [exp] 42 / 0.0005 AT3G52240 148 / 3e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G216300.1 pacid=42768305 polypeptide=Potri.006G216300.1.p locus=Potri.006G216300 ID=Potri.006G216300.1.v4.1 annot-version=v4.1 ATGACAGCACCTGGCAAGGAAGAGAAAGGATGGAGTGAAAGCAAGAAAATGGAAGGACGGGATAGTTGGAGGACTCTAGAATGCCTGAGAGGAAGATTGC TTGCAGAGAGACAAGCTTCAAAGATTGCTAAAGAGGAGGCAGAACTCATGGGCAACAAGTTAATAGAGCTAGAGAACAAAATCAGAGAAGAAACCAAATT AAGGAAAAAAGCCGAGAAGAAGCATAAACTCTTGATGAAGAAGCTCGAATCTTTGAAAATCTCACCTACATTAGAGGGATCAGAGAAGTCAAGTTCATCT GACACTAGTGGATTTTCTAGCACATCATCCACAAGTACTTCAGGCCACAAAGACCCTGAAGAATCTGAATCCAAGCCCCAAAGCATAATCCAAGCACTCT CACAAGATATGAAAGACAATGGCTCCGAAACAACTACATCCAATCAAAATGCGGGTATTGTTTTGGATTCCATTGAAGAGAGTACTGGCACTCAAGATAC TCAAAATTCAAATTCTGGACATAACCTCAAAGACTATTCCTTGGATAAATCTAGCCATGAATCCATGGCATGTTCCCAAGATTCAAAGGCTGATGACCAA AGTTCTTCGAGCATCAAAGCTTCAGTGGCGGAGATGGAGACAAATGCAGGAATTGAGAGCGATAACGAGGACTATGTGGATGATTCTTTGGCATTAGTCC CAATGAGTTTGCCGGCATCTACCAAGAAAAATGAGTTGAAGATAGTTAATAGAAGTGTTATTGAAGTTCTTGATGCTTTAAGGCATGCCAGGGAGCAGAT ACAAAGCTCAATGGAGAACAGACACATGATTAGAGTTGGCCCATCTTGA
AA sequence Show only first row Show all	>Potri.006G216300.1 pacid=42768305 polypeptide=Potri.006G216300.1.p locus=Potri.006G216300 ID=Potri.006G216300.1.v4.1 annot-version=v4.1 MTAPGKEEKGWSESKKMEGRDSWRTLECLRGRLLAERQASKIAKEEAELMGNKLIELENKIREETKLRKKAEKKHKLLMKKLESLKISPTLEGSEKSSSS DTSGFSSTSSTSTSGHKDPEESESKPQSIIQALSQDMKDNGSETTTSNQNAGIVLDSIEESTGTQDTQNSNSGHNLKDYSLDKSSHESMACSQDSKADDQ SSSSIKASVAEMETNAGIESDNEDYVDDSLALVPMSLPASTKKNELKIVNRSVIEVLDALRHAREQIQSSMENRHMIRVGPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Potri.006G216300 [exp]	0	1
AT1G65920			Regulator of chromosome conden...		Potri.017G139600 [exp]	2.44	0.8294
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Potri.018G066300 [exp]	3.00	0.8153	SMH903
					Potri.006G071700 [exp]	3.74	0.8286
AT2G24290			Protein of unknown function (D...		Potri.013G026900 [exp]	8.88	0.8530
AT3G57880			Calcium-dependent lipid-bindin...		Potri.016G049100 [exp]	10.67	0.8445
AT2G22140		ATEME1B	essential meiotic endonuclease...		Potri.007G077400 [exp]	11.66	0.7506
AT5G57670			Protein kinase superfamily pro...		Potri.006G173700 [exp]	12.48	0.8077
AT1G80133			unknown protein		Potri.018G130700 [exp]	14.28	0.7761
AT4G20940			Leucine-rich receptor-like pro...		Potri.011G163700 [exp]	14.49	0.8037
AT2G25270			unknown protein		Potri.006G258700 [exp]	15.19	0.8389

Compare expression of checked genes

Potri.006G216300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.