Plant FIBer expression Database

Potri.006G216400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67680 768 / 0 SRP72 RNA-binding domain (.1)
AT1G67650 699 / 0 SRP72 RNA-binding domain (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006439
[exp]
789 / 0 AT1G67680 783 / 0.0 SRP72 RNA-binding domain (.1)
Lus10037059
[exp]
788 / 0 AT1G67680 759 / 0.0 SRP72 RNA-binding domain (.1)
Lus10011379
[exp]
788 / 0 AT1G67680 773 / 0.0 SRP72 RNA-binding domain (.1)
Lus10036924
[exp]
434 / 7e-147 AT1G67680 440 / 3e-149 SRP72 RNA-binding domain (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08492 SRP72 SRP72 RNA-binding domain
CL0020 TPR PF17004 SRP_TPR_like Putative TPR-like repeat
Representative CDS sequence
>Potri.006G216400.1 pacid=42766920 polypeptide=Potri.006G216400.1.p locus=Potri.006G216400 ID=Potri.006G216400.1.v4.1 annot-version=v4.1
ATGGCTCCCAAAGTGAAAGGCAAAGCGACGGCATCGCAGCAGCCTCCCCCTCCAATTGAAGATCTATTCAGTAACCTCAATCGACACATCGAGCGATCTG
AGTTCGAGCAAGCCGTCAAAGTAGCCGATCAAGTTCTGTCAGTAGCTCCAAACGATGAAGACGCAATTCGATGCAAAGTAGTGGCTTTGATAAAGTGTGA
TAGCATTGACAAAGCTCTTTCGACTATCCACTCTGCTCGAAGGCAAAACCTTCCTTTTGATTTCTCTTACTTCAAGGCATACTGCTTATACCGACAAAAC
AAGTTGGATGAAGCATTGGAGTCGTTGAAAGGTCTTGAGAGAACTTCGGAAACAATGTTGCTAGAATCTCAGATTCTGTTTCGTCTAGGAAAAATGGATG
CTTGTGTTGATGTCTATCAGAAGCTTCAAAAATCGAAGATTGATACTTTAGAAATAAATCTTGTTGCTGGGTTGATTTTGGCTGGGAAGTCTTCTCAAGT
TCAGGGAATGATGGAGGCAAATCGGATTAAAGCTTCTAGCAGTTTTGAGTTGGCATACAACACCGCTTGTTCTTTGATTGAGAGGAATAAATACACTGAT
GCAGAACAGCTTTTGCTGACAGCCCGAAGAGTTGGTCAAGAAGCACTGATGGATGACAATTTGGCTGAGGATGATATAGAGATTGAATTGGCTCCTATAG
CTGTGCAGTTGGCATATGTTCAACAACTCTTAGGACGTTCACCAGAGGCCATGGAAGCTTACACAGAAATCATTAATCGAAATTTGGCAGATGAGTCATC
CTTTGCAGTTGCTGTGAACAATCTTATTGCTCTGAAAGGTTCAAAAGATGTTTCTGATAACCTGAGAAAACTTGATCGGCTAAAAGAACAAGATGCACAG
GCTTTTCAGCTTGCTCGTGGACTTGACAAACTTTCTCCAAAACAAAAGGAAGCAATATATGCAAACCGAGTGCTTTTGCTTCTCCACACGAATAAGATGG
ATCAGGCACGAGAACTTGTCACTGCTCTGCCAGACATGTTTGCTGACAGTGTGCTGCCAGTGTTGCTTCAAGCTGCGGTCTTTGTCAGAGAGAACAAGGC
TGCTAAAGCTGAAGAAATACTTGGCCAGTTTGCTGAGAAGTTCCCTGACAAGTCTAGGGTCATTCTTCTTGCAAGGGCGCAAGTTGCTGCTGCTGCTGGC
CATCCCCAAATTGCAGCCGACTCCCTGTCTAAGATACTTGATATTCAGCACATGCCTGCTACTGTTGCTACTCTAGTTGCTCTTAAAGAGCGTGCTGGAG
ATGTTGATGGTGCATCCACTGTGCTTGACTCTGCAATCAAATGGTGGTCAAATGCCATGACTGAGGACGACAAGCTGAATGTTATAATGCAAGAGGCTGC
TTCATTCAAGGTCAGGCATGGCAAGGAGGAAGATGCTGCCCGCCTATATGAGGAGCTTGTCAGAAGCCGGGGGAGCATAGAGGCTTTGGTTGGGCTGGTG
AATACAGTTGCCCGGGTGGATGTTGACAAGGCAGAAGCCTATGAGAAGAAGCTGAAACCATTGCCAGGTCTGAAGGGGATTGATGTGGATAGTTTGGAGA
AGACTTCTGGAGCTAAGCACGTTGAAGGTGCGTCTGTTGTTGTTACAGGAGCACATGAGGAGGGTAAGAAGGAGAAGCCAAAGAAAAAGAGAAAGAGAAA
GCCAAGGTATCCGAAAGGGTTTGATCCTGCTAATCCAGGCCCTCCTCCAGATCCAGAAAGGTGGCTCCCCAAGAGAGAGAGATCGAGTTACAGGCCCAAG
AGAAAGGATAAGAGGGCAGCTCAGGTGAGAGGTTCTCAGGGAGCTGTAGTGAGAGAAAAACATGAAGCTGGTGCTACCTCTACTAGTTCCAACACATCAA
ATTCAAAATCAAGCCAAGCTACCACTTCCAAAGTAGCTGCAGAACACTCCAAGCCATCATCAAAGTCATCAAGAAAGAAGTCAAGGAATTAA
AA sequence
>Potri.006G216400.1 pacid=42766920 polypeptide=Potri.006G216400.1.p locus=Potri.006G216400 ID=Potri.006G216400.1.v4.1 annot-version=v4.1
MAPKVKGKATASQQPPPPIEDLFSNLNRHIERSEFEQAVKVADQVLSVAPNDEDAIRCKVVALIKCDSIDKALSTIHSARRQNLPFDFSYFKAYCLYRQN
KLDEALESLKGLERTSETMLLESQILFRLGKMDACVDVYQKLQKSKIDTLEINLVAGLILAGKSSQVQGMMEANRIKASSSFELAYNTACSLIERNKYTD
AEQLLLTARRVGQEALMDDNLAEDDIEIELAPIAVQLAYVQQLLGRSPEAMEAYTEIINRNLADESSFAVAVNNLIALKGSKDVSDNLRKLDRLKEQDAQ
AFQLARGLDKLSPKQKEAIYANRVLLLLHTNKMDQARELVTALPDMFADSVLPVLLQAAVFVRENKAAKAEEILGQFAEKFPDKSRVILLARAQVAAAAG
HPQIAADSLSKILDIQHMPATVATLVALKERAGDVDGASTVLDSAIKWWSNAMTEDDKLNVIMQEAASFKVRHGKEEDAARLYEELVRSRGSIEALVGLV
NTVARVDVDKAEAYEKKLKPLPGLKGIDVDSLEKTSGAKHVEGASVVVTGAHEEGKKEKPKKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPK
RKDKRAAQVRGSQGAVVREKHEAGATSTSSNTSNSKSSQATTSKVAAEHSKPSSKSSRKKSRN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G67680 SRP72 RNA-binding domain (.1) Potri.006G216400
[exp]
0 1
AT5G57300 S-adenosyl-L-methionine-depend... Potri.018G088400
[exp]
2.44 0.9279
AT5G60390 GTP binding Elongation factor ... Potri.008G042700
[exp]
4.35 0.9357 Pt-ADR12.2
AT2G17220 Kin3 kinase 3, Protein kinase super... Potri.006G072100
[exp]
4.35 0.9116
AT3G18190 TCP-1/cpn60 chaperonin family ... Potri.012G051300
[exp]
6.92 0.9269
AT5G13490 AAC2 ADP/ATP carrier 2 (.1.2) Potri.001G019400
[exp]
11.22 0.9163
AT1G49660 ATCXE5 carboxyesterase 5 (.1) Potri.004G143100
[exp]
11.35 0.9019
AT2G31660 EMA1, URM9, SAD... UNARMED 9, SUPER SENSITIVE TO ... Potri.014G149600
[exp]
12.84 0.8981
AT5G37010 unknown protein Potri.015G147900
[exp]
13.03 0.9155
AT3G62870 Ribosomal protein L7Ae/L30e/S1... Potri.017G101000
[exp]
16.00 0.9243 Pt-RPL7.7
AT3G02530 TCP-1/cpn60 chaperonin family ... Potri.017G113601
[exp]
16.73 0.9114

Potri.006G216400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.