Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13000 452 / 4e-153 Protein of unknown function, DUF547 (.1.2) AT1G16750 390 / 2e-129 Protein of unknown function, DUF547 (.1) AT5G66600 186 / 3e-51 Protein of unknown function, DUF547 (.1.2.3.4) AT5G47380 174 / 5e-47 Protein of unknown function, DUF547 (.1) AT2G23700 162 / 2e-42 Protein of unknown function, DUF547 (.1) AT4G37080 156 / 9e-41 Protein of unknown function, DUF547 (.1.2.3) AT4G33130 143 / 1e-39 unknown protein AT3G18900 140 / 2e-35 unknown protein AT3G12540 139 / 2e-35 Protein of unknown function, DUF547 (.1) AT5G42690 139 / 3e-35 Protein of unknown function, DUF547 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G003900 [exp] 456 / 1e-153 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.007G033100 [exp] 177 / 4e-48 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.005G130000 [exp] 172 / 2e-46 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.004G150000 [exp] 170 / 2e-45 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4) Potri.009G111100 [exp] 166 / 4e-44 AT5G66600 466 / 5e-158 Protein of unknown function, DUF547 (.1.2.3.4) Potri.001G157200 [exp] 157 / 7e-41 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.007G041100 [exp] 144 / 2e-36 AT4G37080 577 / 0.0 Protein of unknown function, DUF547 (.1.2.3) Potri.010G202900 [exp] 143 / 3e-36 AT2G39690 493 / 9e-171 Protein of unknown function, DUF547 (.1.2) Potri.009G009500 [exp] 140 / 5e-35 AT5G60720 537 / 0.0 Protein of unknown function, DUF547 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039917 [exp] 674 / 0 AT1G16750 457 / 1e-155 Protein of unknown function, DUF547 (.1) Lus10027653 [exp] 665 / 0 AT3G13000 459 / 4e-156 Protein of unknown function, DUF547 (.1.2) Lus10033328 [exp] 445 / 2e-149 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10034787 [exp] 435 / 4e-145 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10037293 [exp] 406 / 8e-135 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10035703 [exp] 369 / 1e-114 AT1G78980 746 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10022480 [exp] 181 / 2e-49 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10016786 [exp] 178 / 5e-48 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10007795 [exp] 163 / 3e-42 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10040507 [exp] 138 / 1e-35 AT2G23700 222 / 1e-65 Protein of unknown function, DUF547 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [poplar] [flax] DUF547 Protein of unknown function, DUF547 PF14389 [poplar] [flax] Lzipper-MIP1 Leucine-zipper of ternary complex factor MIP1
Representative CDS sequence Show only first row Show all	>Potri.006G216800.1 pacid=42768207 polypeptide=Potri.006G216800.1.p locus=Potri.006G216800 ID=Potri.006G216800.1.v4.1 annot-version=v4.1 ATGCTTTGTCTTAAAACGGAAGTCCTTCACGATGACCTCGACAACAACCATCCTAGTAATGTCGATGCTGAAACTGGAAGTGCTGCCACTTCTGGTGGTT TTGTTCTTCCTATGAACCTGGGAGGTTCGATTCATAAATATTTGTGGAGGATTGGAAAGGCGACTACTACCACTATCACCAGCACTCGATCTGTTTCTTC TGGAGATGGGTCTCCTACTTTTTCTGATCTTGAGGATGCTAGAACCCGCAACAAAAGAGGTGGGAAAATGAAAGATGAGGATACGTCTTTTTACAAACAC CAGCTTGAGCAAGAAGTAAAAAAGTTGCAACAACAATTGCAAGAGGAGATTGCCGTGCGCTTAGCTTTAGCAAGTGCTGTTGAACACTCAGATTCATCCT TATCTAATTCACCTTGTCAGCTTCCTGATAAGGCTCAAGAGCTCTTGGATAGCATAGCTATTCTGGAAATCACTGTATCAAAGCTAGAACAAGAATCAGT TGCCCTCCAATATCAGCTTAGTCAAGAGAGAAATGAGCGTCGTCTTGCTGAGTACCATTTGAGGCATTTGCCGTATCCAGCATCATCAACATTTGATTGT TCTCAGTACAACTTTACAGAGATGAGCATGAGAACCTGCAGCATGGAGAAAGCGGAAGGAAGGGCGGAGGATAATACCCTCCTGCCAGATGTAATTAGAG AGCCAGACAAGGATCATTTTGTTGAGAAACTTTGTCACCATCCTAATTGGTTATCAGAAGAAATGGTCCTGTGCATGAGAGATATTTTCCTCTCCTTGGC AGATCCGTCCAAACTTTCTTCTCCTGAGTGTTTAGCGTCACCATCTTCACCTCAGGGCCACCTATCTTATTCTTCTTTGGCATCTTTCTCAGACTCGCCC ATAAAGAACTCCTTGATGAAGAGTCCCCCAGATGACATGGAACATGGTTTGGAGGTCTCTGCAAGATATTGCAAGTTAGATCCGTACAGAGTTCCTGGTA AAGTAGATTGGATGGAGAATATTGGAACCTACTGCAATGCAGTTGAGGTGTCTTGGTTGTCTGTTGGGCAGAAAGAGCTGGAGTATGCTTCTGGAGCTCT CAAAAGATTTAGGTTACTTGTTGAACAGTTGGCTGAAGTTGACCCATCTTGCCTGAGTTGCAATGAGAAGTTGGCATTTTGGATCAACGTGTACAATGCA TTGATTATGCATGCATTTCTAGCATATGGAGTCCCAAAAAGTGAAATTAAATTATTTTCCTTGATGCAGAAGGCTGCTTACATAATCGGAGGGCATTCCA TCAGTGCTGCTGACATTGAATACAACATTCTGAAGATGAAACCCCCAGCACATCGCCCACAAATAGCCTTGGTTCTTGCACTTCAGAAATTTAAGATAAC TGAGGAGCAGAAGAAGTTTTCCATTGATCAACCTGAGCCTCTCCTAGCTTTCGCATTAAGTTGTGGGATGCATTCATCACCTGCAGTGCGGATCTTCAGG CCTGAGAATGTGAATGAGTTGCTTCAGAATTCGTTGAAGGATTATGTCCAAGCATCTGTTGGTATAAGCAATAAGAGTAAACTATTGGTGCCAAAGTTGC TGTATTGTTTTGCCAAAGGCAATGTAGAGGACTTGCTACTGCCTGACTGGATCTGCCAATTCCTAACCCCGGAGCAAGCTGTTGTGGTTAGAGATCGTTT ATCAAACCACAAGTGGAGACTCCTTGGTGCCCGAAGCTTCTCTATCCTACCCTTTGATTCAAGGTTCCGCTTTCTCTTCCTGTTGTAG
AA sequence Show only first row Show all	>Potri.006G216800.1 pacid=42768207 polypeptide=Potri.006G216800.1.p locus=Potri.006G216800 ID=Potri.006G216800.1.v4.1 annot-version=v4.1 MLCLKTEVLHDDLDNNHPSNVDAETGSAATSGGFVLPMNLGGSIHKYLWRIGKATTTTITSTRSVSSGDGSPTFSDLEDARTRNKRGGKMKDEDTSFYKH QLEQEVKKLQQQLQEEIAVRLALASAVEHSDSSLSNSPCQLPDKAQELLDSIAILEITVSKLEQESVALQYQLSQERNERRLAEYHLRHLPYPASSTFDC SQYNFTEMSMRTCSMEKAEGRAEDNTLLPDVIREPDKDHFVEKLCHHPNWLSEEMVLCMRDIFLSLADPSKLSSPECLASPSSPQGHLSYSSLASFSDSP IKNSLMKSPPDDMEHGLEVSARYCKLDPYRVPGKVDWMENIGTYCNAVEVSWLSVGQKELEYASGALKRFRLLVEQLAEVDPSCLSCNEKLAFWINVYNA LIMHAFLAYGVPKSEIKLFSLMQKAAYIIGGHSISAADIEYNILKMKPPAHRPQIALVLALQKFKITEEQKKFSIDQPEPLLAFALSCGMHSSPAVRIFR PENVNELLQNSLKDYVQASVGISNKSKLLVPKLLYCFAKGNVEDLLLPDWICQFLTPEQAVVVRDRLSNHKWRLLGARSFSILPFDSRFRFLFLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13000			Protein of unknown function, D...		Potri.006G216800 [exp]	0	1
AT2G33570			Domain of unknown function (DU...		Potri.005G258900 [exp]	1.41	0.8575
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.010G047900 [exp]	5.47	0.8084
AT3G07470			Protein of unknown function, D...		Potri.014G177800 [exp]	6.00	0.7346
AT2G42110			unknown protein		Potri.016G045700 [exp]	6.92	0.8305
AT1G74680			Exostosin family protein (.1)		Potri.002G210000 [exp]	8.12	0.7884
AT3G54400			Eukaryotic aspartyl protease f...		Potri.001G028200 [exp]	8.71	0.8125
AT5G13760			Plasma-membrane choline transp...		Potri.001G261900 [exp]	9.79	0.8027
AT3G17090			Protein phosphatase 2C family ...		Potri.008G104300 [exp]	11.66	0.7731
AT5G48450		SKS3	SKU5 similar 3 (.1)		Potri.014G177700 [exp]	12.48	0.8065
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Potri.011G010500 [exp]	14.49	0.7891

Compare expression of checked genes

Potri.006G216800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.