Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20900 126 / 3e-36 ZIM TIFY3B, JAZ12 jasmonate-zim-domain protein 12 (.1) AT3G43440 84 / 2e-19 ZIM TIFY3A, JAZ11 jasmonate-zim-domain protein 11 (.1.2) AT1G74950 71 / 1e-14 ZIM TIFY10B, JAZ2 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) AT1G72450 64 / 5e-12 ZIM TIFY11B, JAZ6 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) AT1G19180 62 / 1e-11 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1 (.1.2) AT4G14713 59 / 3e-10 ZIM TIFY4A, PPD1 PEAPOD 1, TIFY domain/Divergent CCT motif family protein (.1.2) AT1G70700 59 / 3e-10 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2) AT1G17380 59 / 4e-10 ZIM TIFY11A, JAZ5 jasmonate-zim-domain protein 5 (.1) AT5G13220 58 / 4e-10 ZIM JAS1, TIFY9, JAZ10, AT5G13220 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) AT1G48500 53 / 4e-08 ZIM TIFY6A, JAZ4 TIFY DOMAIN PROTEIN 6A, jasmonate-zim-domain protein 4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G047100 [exp] 340 / 5e-120 AT5G20900 122 / 6e-35 jasmonate-zim-domain protein 12 (.1) Potri.006G139400 [exp] 77 / 9e-17 AT1G19180 184 / 2e-57 jasmonate-zim-domain protein 1 (.1.2) Potri.003G068900 [exp] 70 / 3e-14 AT1G72450 129 / 4e-36 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) Potri.001G062500 [exp] 66 / 4e-13 AT5G13220 170 / 8e-54 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Potri.001G166200 [exp] 65 / 2e-12 AT1G19180 112 / 1e-29 jasmonate-zim-domain protein 1 (.1.2) Potri.003G165000 [exp] 60 / 6e-11 AT5G13220 167 / 2e-52 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Potri.015G035800 [exp] 50 / 4e-07 AT3G17860 219 / 5e-68 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.008G133400 [exp] 49 / 7e-07 AT3G17860 169 / 1e-49 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.007G116550 [exp] 46 / 1e-05 AT3G21175 228 / 3e-73 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027639 [exp] 127 / 5e-36 AT5G20900 107 / 8e-29 jasmonate-zim-domain protein 12 (.1) Lus10011929 [exp] 127 / 6e-36 AT5G20900 108 / 4e-29 jasmonate-zim-domain protein 12 (.1) Lus10013166 [exp] 81 / 3e-18 AT1G74950 118 / 2e-32 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10039911 [exp] 77 / 2e-16 AT1G19180 161 / 3e-48 jasmonate-zim-domain protein 1 (.1.2) Lus10008129 [exp] 74 / 2e-15 AT1G74950 114 / 1e-30 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10027648 [exp] 74 / 2e-15 AT1G19180 159 / 3e-47 jasmonate-zim-domain protein 1 (.1.2) Lus10002576 [exp] 57 / 9e-10 AT5G13220 112 / 2e-31 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Lus10014700 [exp] 58 / 2e-09 AT4G14720 181 / 3e-54 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10035804 [exp] 57 / 2e-09 AT5G20900 62 / 3e-11 jasmonate-zim-domain protein 12 (.1) Lus10001803 [exp] 53 / 3e-08 AT5G13220 100 / 1e-26 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06200 [poplar] [flax] tify tify domain CL0281 [poplar] [flax] CCT PF09425 [poplar] [flax] Jas_motif Jas motif
Representative CDS sequence Show only first row Show all	>Potri.006G217200.2 pacid=42768563 polypeptide=Potri.006G217200.2.p locus=Potri.006G217200 ID=Potri.006G217200.2.v4.1 annot-version=v4.1 ATGACTTTTGTTGCCTCTGATCTGGTTCCAATGGGGGGTCAATCTAATTCTTGCAAGGAAATGAAGCCACAAGAAGATATTGAAGTGAAAAAGGAGCAAG AGGTTACCAATGGTTGTGGTGAAAATCTGGTATCTTGCAAGGAAGGTGCTGATTTGTTGGAGAAAAAAGGGGTCCATCCTCTTTGGACACCCAGTTCCAG GCCCACAATTATGGCAACTTCCGGACCAAATGCCACCATTCCTACTCCGGATCAGCTTACCATCTTCTATGGTGGAAGTGTTGTCGTGTTTGATGCAATT CCTGCAGAAAAGGTCCAAGAAATTATGCTTATTGCTGCTGCTGCTGCTGCTGCTGTCAAACCTGTTGACATGAAGAAAAGTGGGTCTCCTGATGGTACAC CAGTTCTTACAAGGTCTCCTTCAATGCAAAGTACTGCTGCCCCACATGCCCAAGCCTATAGTCGTCAGAATTCCTTTTGCAGAATGCAAGCTGAATTACC TATTGCTAGGAGACATTCTCTGCAGCGATTCTTCGAGAAGCGTCGGGACAGGCTGGTGAGCAAAAGCCCGTATCCCACTTCACCGGAAGGAAAAGAGGCA GACACCACAAAACCTGGTATCAGTGCTGCACCTTCACCAGATGCAGGTTGCTTTGGAAAATCTCTTGCATCAGACGAACTTCAACCAAAGGTTGCTTCCA ACCTTGCTTGA
AA sequence Show only first row Show all	>Potri.006G217200.2 pacid=42768563 polypeptide=Potri.006G217200.2.p locus=Potri.006G217200 ID=Potri.006G217200.2.v4.1 annot-version=v4.1 MTFVASDLVPMGGQSNSCKEMKPQEDIEVKKEQEVTNGCGENLVSCKEGADLLEKKGVHPLWTPSSRPTIMATSGPNATIPTPDQLTIFYGGSVVVFDAI PAEKVQEIMLIAAAAAAAVKPVDMKKSGSPDGTPVLTRSPSMQSTAAPHAQAYSRQNSFCRMQAELPIARRHSLQRFFEKRRDRLVSKSPYPTSPEGKEA DTTKPGISAAPSPDAGCFGKSLASDELQPKVASNLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20900	ZIM	TIFY3B, JAZ12	jasmonate-zim-domain protein 1...		Potri.006G217200 [exp]	0	1
AT4G16990		RLM3	RESISTANCE TO LEPTOSPHAERIA MA...		Potri.013G085201 [exp]	1.41	0.8196
AT3G47370			Ribosomal protein S10p/S20e fa...		Potri.002G116900 [exp]	2.00	0.8103
AT5G47920			unknown protein		Potri.003G160300 [exp]	8.30	0.8168
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Potri.015G143700 [exp]	10.58	0.7602
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Potri.005G237600 [exp]	11.61	0.7942
AT5G20950			Glycosyl hydrolase family prot...		Potri.019G037400 [exp]	15.87	0.7838
AT1G48910		YUC10	YUCCA 10, Flavin-containing mo...		Potri.002G207400 [exp]	18.16	0.7748
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Potri.002G258600 [exp]	18.33	0.7514
AT5G47100		ATCBL9, CBL9	calcineurin B-like protein 9 (...		Potri.001G150200 [exp]	18.76	0.7782	CBL1.4
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Potri.019G062600 [exp]	21.49	0.7347	Pt-GLX2.1

Compare expression of checked genes

Potri.006G217200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.