Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43520 161 / 5e-49 Transmembrane proteins 14C (.1) AT2G26240 138 / 8e-42 Transmembrane proteins 14C (.1) AT1G50740 50 / 5e-08 Transmembrane proteins 14C (.1) AT3G20510 46 / 2e-06 Transmembrane proteins 14C (.1) AT1G33265 43 / 5e-05 Transmembrane proteins 14C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G424000 [exp] 50 / 8e-08 AT1G50740 158 / 2e-51 Transmembrane proteins 14C (.1) Potri.011G138100 [exp] 46 / 1e-06 AT1G50740 128 / 1e-39 Transmembrane proteins 14C (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011926 [exp] 192 / 3e-61 AT3G43520 166 / 7e-51 Transmembrane proteins 14C (.1) Lus10027640 [exp] 185 / 3e-58 AT3G43520 164 / 4e-50 Transmembrane proteins 14C (.1) Lus10019624 [exp] 49 / 2e-07 AT1G50740 177 / 8e-59 Transmembrane proteins 14C (.1) Lus10008541 [exp] 47 / 1e-06 AT1G50740 178 / 3e-59 Transmembrane proteins 14C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03647 [poplar] [flax] Tmemb_14 Transmembrane proteins 14C
Representative CDS sequence Show only first row Show all	>Potri.006G217400.1 pacid=42769211 polypeptide=Potri.006G217400.1.p locus=Potri.006G217400 ID=Potri.006G217400.1.v4.1 annot-version=v4.1 ATGGCCGAAATTGCGTTTTTAGGCGGTGGTGGTGTAGTTGCGGCATCCCAGTCTTCCCTTCTCCTCCAACCTTCCAAATTTGGATTCCATACACTCGCAC CTCCATCAATATCCCTGCTCCGCCTTCACCAGCCCTCAACCTCACTCTTTTCTTCCCCCAATCCTAAGCTGCACACTTCCATTTTCGCTGCTAAAGTCGT CTCTTCTTATTCTGAAGCCACCTCGTCTCCCTCCAGTACTATCATAACTGATAACGTTGACCTGTCAACTGAAGGAATCGAGATCGAATTAGACACCGGA GGAGGAGGCAGCGACGGTTATAAAGATATTAGCGGCGGAGGCGGCGACGGTGGTGGTGGTGGTAAAAACGAAGGAGAAGGAGGATCGCCAGACGAGAGTG GAAGTGAAAAGAAAATGGCTTTGTCCATGTCTCAAAAATTGACTCTTGGCTATGCTGCTCTTGTTGGAATCGGTGGTGCTATGGGGTATATGAAGAGTGG TAGCCAGAAATCGCTGTTGGCAGGAGGAATTTCTGCCTCGGTTCTGTATTATGTTTATACACAGCTTCCTGCGAATCCGGTTTATGCATCATCAATAGGG CTTGGTATATCTGCTGCACTTATGGGAGTGATGGGCTCCCGTTTTTTGAAGTCCAGGAAGATTTTTCCTGCTGGTGTGGTGTCTCTTGTGTCATTCATAA TGACTGGTGGCTACCTCCATGGAATCCTTCGGAGTATGCATTGA
AA sequence Show only first row Show all	>Potri.006G217400.1 pacid=42769211 polypeptide=Potri.006G217400.1.p locus=Potri.006G217400 ID=Potri.006G217400.1.v4.1 annot-version=v4.1 MAEIAFLGGGGVVAASQSSLLLQPSKFGFHTLAPPSISLLRLHQPSTSLFSSPNPKLHTSIFAAKVVSSYSEATSSPSSTIITDNVDLSTEGIEIELDTG GGGSDGYKDISGGGGDGGGGGKNEGEGGSPDESGSEKKMALSMSQKLTLGYAALVGIGGAMGYMKSGSQKSLLAGGISASVLYYVYTQLPANPVYASSIG LGISAALMGVMGSRFLKSRKIFPAGVVSLVSFIMTGGYLHGILRSMH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G43520			Transmembrane proteins 14C (.1...		Potri.006G217400 [exp]	0	1
AT2G27470	CCAAT	NF-YB11	"nuclear factor Y, subunit B11...		Potri.009G163500 [exp]	1.00	0.7218
AT4G14145			unknown protein		Potri.010G223700 [exp]	5.09	0.6855
AT5G18120		ATAPRL7	APR-like 7 (.1)		Potri.019G035700 [exp]	6.24	0.6593
					Potri.001G015450 [exp]	8.48	0.6434
					Potri.005G170132 [exp]	16.49	0.5939
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Potri.001G168300 [exp]	24.28	0.5410	Pt-TAFII21.2
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Potri.016G121200 [exp]	27.14	0.6086
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Potri.005G098700 [exp]	28.19	0.5965
AT3G51980			ARM repeat superfamily protein...		Potri.001G072200 [exp]	28.63	0.6086
AT5G63905			unknown protein		Potri.014G015866 [exp]	33.68	0.6435

Compare expression of checked genes

Potri.006G217400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.