Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20910 360 / 2e-125 AIP2 ABI3-interacting protein 2, RING/U-box superfamily protein (.1) AT5G15820 94 / 8e-22 RING/U-box superfamily protein (.1) AT3G19950 88 / 7e-20 RING/U-box superfamily protein (.1) AT5G01980 89 / 1e-19 RING/U-box superfamily protein (.1) AT2G39720 86 / 1e-18 RHC2A RING-H2 finger C2A (.1) AT3G02340 86 / 1e-18 RING/U-box superfamily protein (.1) AT5G08139 84 / 5e-18 RING/U-box superfamily protein (.1) AT4G26400 83 / 6e-18 RING/U-box superfamily protein (.1.2) AT3G30460 79 / 7e-18 RING/U-box superfamily protein (.1) AT5G60820 81 / 9e-17 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G074014 [exp] 94 / 4e-22 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 95 / 5e-22 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 94 / 8e-22 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.001G243300 [exp] 93 / 2e-21 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.015G047900 [exp] 93 / 7e-21 AT5G08139 201 / 3e-60 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 91 / 9e-21 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.012G065300 [exp] 92 / 2e-20 AT5G08139 178 / 4e-51 RING/U-box superfamily protein (.1) Potri.006G112100 [exp] 88 / 3e-19 AT5G01980 293 / 1e-92 RING/U-box superfamily protein (.1) Potri.016G141600 [exp] 87 / 3e-19 AT5G01980 226 / 1e-69 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034667 [exp] 409 / 2e-144 AT5G20910 391 / 2e-137 ABI3-interacting protein 2, RING/U-box superfamily protein (.1) Lus10017865 [exp] 401 / 2e-141 AT5G20910 389 / 2e-136 ABI3-interacting protein 2, RING/U-box superfamily protein (.1) Lus10008874 [exp] 92 / 8e-21 AT5G08139 198 / 3e-59 RING/U-box superfamily protein (.1) Lus10023235 [exp] 92 / 1e-20 AT5G08139 194 / 7e-58 RING/U-box superfamily protein (.1) Lus10010179 [exp] 87 / 1e-19 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10002637 [exp] 87 / 3e-19 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10040783 [exp] 86 / 5e-19 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10020258 [exp] 87 / 1e-18 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10024372 [exp] 83 / 6e-18 AT5G59550 197 / 5e-60 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10031422 [exp] 82 / 1e-17 AT5G64920 210 / 5e-66 COP1-interacting protein 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.006G217600.1 pacid=42769342 polypeptide=Potri.006G217600.1.p locus=Potri.006G217600 ID=Potri.006G217600.1.v4.1 annot-version=v4.1 ATGGGGTCCAATGAACAATTATTGAAAAAAGAATTAGAAGAATTGCAGAAACAGCTGGGCAAGAAACAGAAATTCGAAGACGCACTCTCTTCTCTCAAAT CCCTCCTCCGTCTCCACTACCCCTCAGCTTCTCCTTCTCTCCGTAAAACATTTTATTCTGTTGTTTGTAGAGTTGCAACCGTGCTAAAGACTAGATACAT AGCTCCTGGTTTCTGGCTTGCTGGGTTAGGATTGTTTCAAGAAGCTCTACTCTTGACCTCTGATTCCACCGAGAAGGAGCACTTGAAAAATTGCATTGCT CAAGCTAAAGAACACTTGGATCAAATCGAAAACCCCCCTGATGTTTCCCAAAATAGCGGGTATCTGTTCGAGGGGCATCTTACTGTGGATCCTGAACCAC CACGGCCCCAGTGGTTAGTGCAGTCGAACATCTTGAATTCTATGGCCACACTTCAGGAATTTGAATCTTCTGGGCGTCCTGTGGATAACAATACTATAGA GACTGCTTCCAATCTACTTGGAGAGTTAATGAGCAATTTTGATGATATGATACCAGAGATTATGGAAATGGGTTCCACAGCCCCGAGAGTGCCTCCTGCC AGTAAAGAGGTTGTTGCAAAGCTTCCAGTAATTACTATCACAGAGGAGATCTTGGCTGAGCTAGGGAAGGATGCAGAATGTGCAATTTGCAAAGAGAATT TGGTTGTCAATGACAAAATGCAAGAGTTGCCATGCAAGCACAGATTCCACCCTCCTTGTCTTAAGCCATGGCTGGATGAACACAATTCTTGTCCAATTTG CCGACATGAGCTGCAAACTGATGATCATGCTTATGAGAGCTGGAAAGAGCGGGAGAAGGAGGCTGCAGAAGAGAGGAAAGGTGCTGAAAATGCTGTGCGT GGTGGTGAATTCATGTACATTTAG
AA sequence Show only first row Show all	>Potri.006G217600.1 pacid=42769342 polypeptide=Potri.006G217600.1.p locus=Potri.006G217600 ID=Potri.006G217600.1.v4.1 annot-version=v4.1 MGSNEQLLKKELEELQKQLGKKQKFEDALSSLKSLLRLHYPSASPSLRKTFYSVVCRVATVLKTRYIAPGFWLAGLGLFQEALLLTSDSTEKEHLKNCIA QAKEHLDQIENPPDVSQNSGYLFEGHLTVDPEPPRPQWLVQSNILNSMATLQEFESSGRPVDNNTIETASNLLGELMSNFDDMIPEIMEMGSTAPRVPPA SKEVVAKLPVITITEEILAELGKDAECAICKENLVVNDKMQELPCKHRFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAAEERKGAENAVR GGEFMYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Potri.006G217600 [exp]	0	1
AT4G16144		AMSH3	associated molecule with the S...		Potri.010G141100 [exp]	2.23	0.8003
AT4G24990		ATGP4	Ubiquitin family protein (.1)		Potri.015G101200 [exp]	3.60	0.8594
AT3G54360			zinc ion binding (.1)		Potri.001G036400 [exp]	5.29	0.8170
AT5G47180			Plant VAMP (vesicle-associated...		Potri.001G152100 [exp]	5.74	0.8324
					Potri.004G034301 [exp]	9.00	0.7432
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G263500 [exp]	9.16	0.7850	CIPK25.1
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Potri.002G034200 [exp]	16.97	0.7615	Pt-RER1.5
AT1G68585			unknown protein		Potri.008G119300 [exp]	18.97	0.7772
AT3G59600		NRPE8B, NRPD8B,...	RNA polymerase Rpb8 (.1)		Potri.013G120500 [exp]	19.44	0.7241	Pt-ATRPABC16.2
AT1G77220			Protein of unknown function (D...		Potri.002G071400 [exp]	23.74	0.7658

Compare expression of checked genes

Potri.006G217600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.