Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43540 493 / 6e-175 Protein of unknown function (DUF1350) (.1), Protein of unknown function (DUF1350) (.2) AT5G47860 136 / 1e-35 Protein of unknown function (DUF1350) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G072400 [exp] 135 / 2e-35 AT5G47860 578 / 0.0 Protein of unknown function (DUF1350) (.1) Potri.003G158400 [exp] 135 / 2e-35 AT5G47860 605 / 0.0 Protein of unknown function (DUF1350) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019508 [exp] 475 / 8e-162 AT1G80770 560 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043354 [exp] 453 / 7e-152 AT1G80770 550 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10009920 [exp] 138 / 3e-36 AT5G47860 612 / 0.0 Protein of unknown function (DUF1350) (.1) Lus10024193 [exp] 127 / 3e-32 AT5G47860 566 / 0.0 Protein of unknown function (DUF1350) (.1) Lus10042222 [exp] 117 / 8e-29 AT5G47860 548 / 0.0 Protein of unknown function (DUF1350) (.1) Lus10008591 [exp] 101 / 3e-23 AT5G47860 486 / 1e-171 Protein of unknown function (DUF1350) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF07082 [poplar] [flax] DUF1350 Protein of unknown function (DUF1350)
Representative CDS sequence Show only first row Show all	>Potri.006G217700.1 pacid=42767760 polypeptide=Potri.006G217700.1.p locus=Potri.006G217700 ID=Potri.006G217700.1.v4.1 annot-version=v4.1 ATGGAACTGGCCACTTCACTTTGCTACACTTCTCCAAACAATCTCACAGCCGATTATAATAATAATCCTAGGTACCCATCAAAAACCAAGTTTAACCCAC CTTTTTATCCATGGGTTCCTACGCGAAGATCTAAAACTTCGGGATCTTCTTCTTTATCAAGAATGGTTTCAAATGGGTATGCTGGTAGAAGCAGCAGCAA CTTTAGATATGGAGATGGTAATACTGTTATTACTAATACCAACTACAAGCAGCGACAGAAATACACGCAGATGGAGTCATGTTTAGTCATACCTCCACCT AAAGGTAGAAAGCCACGTGCCATCATCAAATTCCTTGGTGGTGCCTTCATTGGAGCTGTCCCTGAAGTCACTTACAGTTGTTTGATTGAGCTATTGGCAA AGGATGGTTATGTTGTTATTTTAGTGCCTTACAACGTGACATTCGATCATTCTAAAGCTGCTGATCAAGTCTATGAGAGGTTCAATGCTTGCTTGGATTT ATTACTGCAATCTGGATTGCCCCATGATGGTTTAACTGCTTCGGAGCTTGTTGGCCTTCCACTTTTTTCTGTTGGTCACAGCAATGGGGCACTTCTCCAA GTTCTAACAGGAAGTTATTTCTGTGAGAAGATACCAAAGGCTAATGCCATAATCTCATTCAACAACAGGCCTGCTACAGAGGCGGTGCCATATTTTGAGC AGCTAGGTCCACTAGTTAATCAGATGATGCCTGTTTTCGAAGCTTCTCCAATGTATGCGATGGCCAGGAGTGCATCAGGAGATGCATGGAAGGTTCTGCT TGATACAGCTGGAACAATTATACCTGATAGCGAACAAGAAGCCCTAATTTCATTGACCAAATTTGTTGATCAGTTGCCATCAGTATTTGGTCAGGTCACA GAAGGGATATCAGAGTTCAAGCCAACACCCTCTGAAAACCGTGATTGTTGCAGGAACTCGTATAATGTTCAACACACATTACTGGTGAAGTTCAACTCTG ATGCGATTGATGAGACAGATGTCCTTGAAGAGACCCTGAAACCTCGTGTTGAGTCCATAGGTGGAACAATAGAAAAGGTCCAATTAAGTGGCAGCCATAT CACCCCATGCATACAGGAACCAAAATGGCAAGCAGGTTATGTGTACACTCCTGTAGATGCCATTGCTCAAGGCCTTAAAACTCTCTCATTGAATGAGACT AAAGTCCTCTCCAGAACCATCTGTGACTGGCTCAGGTGTTTTGAAGATTTGAGTGCTTGA
AA sequence Show only first row Show all	>Potri.006G217700.1 pacid=42767760 polypeptide=Potri.006G217700.1.p locus=Potri.006G217700 ID=Potri.006G217700.1.v4.1 annot-version=v4.1 MELATSLCYTSPNNLTADYNNNPRYPSKTKFNPPFYPWVPTRRSKTSGSSSLSRMVSNGYAGRSSSNFRYGDGNTVITNTNYKQRQKYTQMESCLVIPPP KGRKPRAIIKFLGGAFIGAVPEVTYSCLIELLAKDGYVVILVPYNVTFDHSKAADQVYERFNACLDLLLQSGLPHDGLTASELVGLPLFSVGHSNGALLQ VLTGSYFCEKIPKANAIISFNNRPATEAVPYFEQLGPLVNQMMPVFEASPMYAMARSASGDAWKVLLDTAGTIIPDSEQEALISLTKFVDQLPSVFGQVT EGISEFKPTPSENRDCCRNSYNVQHTLLVKFNSDAIDETDVLEETLKPRVESIGGTIEKVQLSGSHITPCIQEPKWQAGYVYTPVDAIAQGLKTLSLNET KVLSRTICDWLRCFEDLSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G43540			Protein of unknown function (D...		Potri.006G217700 [exp]	0	1
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.006G043092 [exp]	1.41	0.9081
AT5G53750			CBS domain-containing protein ...		Potri.004G041000 [exp]	2.00	0.8758
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Potri.010G053500 [exp]	2.23	0.8312
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Potri.018G115100 [exp]	8.00	0.7514
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G016733 [exp]	11.40	0.7998
AT2G01220			Nucleotidylyl transferase supe...		Potri.010G120200 [exp]	13.22	0.7769
AT4G13550			triglyceride lipases;triglycer...		Potri.010G062700 [exp]	13.74	0.7814
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Potri.001G085500 [exp]	16.12	0.7820	WNK8.2
AT1G56300			Chaperone DnaJ-domain superfam...		Potri.005G020300 [exp]	17.77	0.7466
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Potri.001G171000 [exp]	32.49	0.7811	Pt-ATPDAT.2

Compare expression of checked genes

Potri.006G217700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.