Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21280 88 / 4e-19 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009801 [exp] 212 / 8e-65 AT5G21280 90 / 3e-20 hydroxyproline-rich glycoprotein family protein (.1) Lus10038083 [exp] 195 / 2e-58 AT5G21280 89 / 9e-20 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G217900.1 pacid=42768185 polypeptide=Potri.006G217900.1.p locus=Potri.006G217900 ID=Potri.006G217900.1.v4.1 annot-version=v4.1 ATGAGGGCTCGATCCTCTAAGCAAGAAACTAAAGAGGGCATGGAAACTGGTAAACTTAGGAAGCTGAAGGAAGAGCCTCATCTCTCTGGTGCTTATATAC GTAGCCTTGTGAAACAGTTAACCTCTTCAAGAACCAAAGACCCCATGAATCCCAAAGGCCACGGCTCTGCTGATAGTGATGGTTTTTCTGGCAAAAATAT GGCCGATTATAGCGAAGGTTTAAGTAAAAACCAAAAAAGCCAGCAACCCCAAGAACCTCAACCACACAAAAAACAGGTCAGGAGGAGACTGCACACCAGT AGGCCTTACCAAGAAAGGCTTCTTAATATGGCCGAGGCTAGAAGAGAGATTGTCACTGCCCTAAAGTTTCACAGGGCAGCTATGAAACAGGCCAATGAAC AACAACAAGAACAGAAAAATCAACAAGAACAAGAACAGCAGCAGAAGCAGCAGCAGCAGCAACAATCATCGCTGCCTGTGCAGCTTTTACCCCCTCCTTG TTTTGAACAAGAAGGAAAAATAAAATCTAGGAGAAATCCAAGAATATACCCATCAAACTCTACCGATTTTTCTAATTATCTCGACAACTTTTCCTATAAA CCTTTCACTCCTCCTCCTCCCTGTCCTCCTCCATATCCCTTTTCCTGGCCTAGTTCTTCAATTCTTGACCCAACTACCGCTGAAAATATCAACTTTCCCC TTCCAAACCAAACCTTAGGTCTAAACCTCAATTTTCATGATTTTAACAACATAGATACCACTCTTTATTACAGCAGCGACAACCCACCATCAGTTTACTC ATCCTCATCTCCATCATCTTCTTCTTTCCCTTCTCCTTTCATCGCCACCGAGGAGATTCCTTCAGTTTCAAATACATGCGAAGGAATGCCACCTGCAGCA TTTGATGAAACTGACTCATATGGTGGAGCCGGCTTACATCAAGTGATGGATGATGAGGAGATGGCAGAGATCAGATCAATAGGAGAACAACATCAAATGG AATGGAATGATACTATGAATTTGGTCACATCAGCATGGTGGTTCAAGTTCATGAAGACCACGGGGCTTGATCCTGAAGTGAAGAGTACAGAGGATGATGG CTGCCACCCATTTGAACAGGTCATGGAATTCCCAGCCTGGTTGAATGCAAATGATCAACAACATTTCAATGATCACTTCTCCCAAGACTATTTCCATGAT GCTGCCTTGCCTTGCATGGACATTGGAGAAATTGAAGGAATTGATGGGGAGTGGCTAGCTTGA
AA sequence Show only first row Show all	>Potri.006G217900.1 pacid=42768185 polypeptide=Potri.006G217900.1.p locus=Potri.006G217900 ID=Potri.006G217900.1.v4.1 annot-version=v4.1 MRARSSKQETKEGMETGKLRKLKEEPHLSGAYIRSLVKQLTSSRTKDPMNPKGHGSADSDGFSGKNMADYSEGLSKNQKSQQPQEPQPHKKQVRRRLHTS RPYQERLLNMAEARREIVTALKFHRAAMKQANEQQQEQKNQQEQEQQQKQQQQQQSSLPVQLLPPPCFEQEGKIKSRRNPRIYPSNSTDFSNYLDNFSYK PFTPPPPCPPPYPFSWPSSSILDPTTAENINFPLPNQTLGLNLNFHDFNNIDTTLYYSSDNPPSVYSSSSPSSSSFPSPFIATEEIPSVSNTCEGMPPAA FDETDSYGGAGLHQVMDDEEMAEIRSIGEQHQMEWNDTMNLVTSAWWFKFMKTTGLDPEVKSTEDDGCHPFEQVMEFPAWLNANDQQHFNDHFSQDYFHD AALPCMDIGEIEGIDGEWLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G21280			hydroxyproline-rich glycoprote...		Potri.006G217900 [exp]	0	1
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Potri.014G112266 [exp]	22.89	0.8796
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Potri.014G126700 [exp]	28.08	0.8790	RSH1.2
AT1G50180			NB-ARC domain-containing disea...		Potri.005G008732 [exp]	30.72	0.8194
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.002G068400 [exp]	30.98	0.8676
AT5G53170		FTSH11	FTSH protease 11 (.1)		Potri.015G020700 [exp]	41.07	0.8672
AT1G03160		FZL	FZO-like (.1.2)		Potri.005G209200 [exp]	49.95	0.8610
AT1G05700			Leucine-rich repeat transmembr...		Potri.019G094250 [exp]	51.23	0.8524
					Potri.010G007976 [exp]	58.45	0.8176
AT5G53350		CLPX	CLP protease regulatory subuni...		Potri.012G015600 [exp]	60.33	0.8352
AT2G05810			ARM repeat superfamily protein...		Potri.014G158700 [exp]	62.49	0.8544

Compare expression of checked genes

Potri.006G217900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.