Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26250 897 / 0 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) AT1G19440 633 / 0 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G26640 613 / 0 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT2G16280 612 / 0 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT1G04220 598 / 0 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT1G68530 581 / 0 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT1G01120 572 / 0 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT4G34510 560 / 0 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT5G43760 554 / 0 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT1G25450 551 / 0 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G116700 [exp] 637 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.006G080400 [exp] 634 / 0 AT2G26250 575 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Potri.004G155600 [exp] 627 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.018G032200 [exp] 622 / 0 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.014G196200 [exp] 613 / 0 AT1G19440 854 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.006G249200 [exp] 612 / 0 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.008G160000 [exp] 608 / 0 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080200 [exp] 605 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079700 [exp] 602 / 0 AT2G26640 756 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016528 [exp] 917 / 0 AT2G26250 866 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10040796 [exp] 915 / 0 AT2G26250 861 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10009799 [exp] 840 / 0 AT2G26250 797 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10026345 [exp] 625 / 0 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10042318 [exp] 625 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10001657 [exp] 610 / 0 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10002533 [exp] 608 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10030209 [exp] 600 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10002691 [exp] 599 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10019446 [exp] 597 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF08392 [poplar] [flax] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [poplar] [flax] Thiolase PF08541 [poplar] [flax] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Potri.006G218000.2 pacid=42768600 polypeptide=Potri.006G218000.2.p locus=Potri.006G218000 ID=Potri.006G218000.2.v4.1 annot-version=v4.1 ATGGCTAATGAAAGAGATCTCTTGTCCACCGAGATTGTGAAGCATGGGGTCGAGTCTTCAGGGCCCAATGCTGGTTCACCAACATTTTCAGTGAGGGTCA GGAAAAGGTTGCCTGACTTTCTTCAATCGGTGAATCTAAAGTATGTCAAGTTGGGTTACCATTACCTTATCAATCATGCCATCTACTTGGCTACCATTCC TGTTTTGGTCCTCGTGTTTAGTGCTGAGGTGGGGAGCCTTAGCAGGGAAGAGTTGTGGAAGAAACTTTGGCAAGATGCTCGCTATGATCTTGCCACCGTG CTTGCTTCCTTTGGTGTTCTTGTGTTCACAGTTTCTGTCCACTTCATGTCACGCCCAAGGTCTATTTATCTCATTGATTTTGCATGTTATCGTCCTGATG ATGATCTCAAGGTGACGAGGGAGCAGTTCATCGAGCAAGCAAGGAAATCAGGCAAGTTTGATGAGGCAAGCCTCGAATTCCAAAATAGAATTCTGAAATC ATCAGGCTTAGGAGACGAGACCTATATTCCAAAAGCAATAATGTCACACGAGAATTGTGCAACCATGAAGGAAGGGCGTTTTGAAGCCTCAACAGTAATG TTTGGTGCCCTTGATGAGCTCTTTGAAAAAACCAGGGTCCGCCCCAAAGATGTTGGGATCCTCGTGGTAAACTGCAGCGTCTTTAACCCAACGCCGTCGC TCTCTGCCATGATCATCAATCACTACAAGATGAGGGGCAACATTTTAAGCTTTAATCTTGGTGGTATGGGCTGCAGCGCTGGGATTATAGCGGTGGATTT AGCCCGTGACATGTTACAAGCTAACCCAAATAATTATGCTGTGGTGGTTAGCACTGAGATGGTGGGCTATAATTGGTATCCAGGCCGAGACCGTTCTATG CTTATTCCTAATTGCTTTTTTAGGATGGGTTGCTCCGCCGTGCTCTTGTCTAACCGCCGCCGCGACTTTCGCCATGCCAAGTACCGCCTTGAACATATAG TCCGGACCCACAAAGGAGCTGATGACCGTAGTTTCAGGTGTATTTACCAAGATGAAGATGAACAGAAATTCAAGGGGCTGAAAGTCAGCAAAGACCTCGT GCAAATAGGAGGTGAAGCCCTTAAAACCAACATCACCACGCTAGGCCCTCTAGTGCTACCCTTCTCAGAGCAGCTCCTCTTCTTTACCACACTGATTTGG AGGCACTTATCTGGAAAGAGCAACGGGTCCCCATCTTCGCCACCGGCCAAGCCTTACATTCCAGACTACAAGCTTGCCTTTGAGCACTTCTGTGTCCATG CAGCCAGCAAGACGGTGCTCGATGAGCTGCAAAGGAATCTTGAACTGAGTGAGAAGAACATAGAGGCATCAAGAATGACACTGCACAGGTTTGGCAACAC TTCTAGCAGCAGTGTCTGGTATGAGTTGGCCTACTTGGAAGCTAAGGAAAGGGTGAAGAGAGGAGACAGGATTTGGCAAATTGCTTTCGGGTCTGGGTTC AAGTGCAACAGCGTGGTTTGGAGGTCCATGGGGCGTGTGAGAAAGCCTTCTAGGAACAATCCTTGGCTCGATTCCATTGACAGATACCCCGTGCCTTTGT AA
AA sequence Show only first row Show all	>Potri.006G218000.2 pacid=42768600 polypeptide=Potri.006G218000.2.p locus=Potri.006G218000 ID=Potri.006G218000.2.v4.1 annot-version=v4.1 MANERDLLSTEIVKHGVESSGPNAGSPTFSVRVRKRLPDFLQSVNLKYVKLGYHYLINHAIYLATIPVLVLVFSAEVGSLSREELWKKLWQDARYDLATV LASFGVLVFTVSVHFMSRPRSIYLIDFACYRPDDDLKVTREQFIEQARKSGKFDEASLEFQNRILKSSGLGDETYIPKAIMSHENCATMKEGRFEASTVM FGALDELFEKTRVRPKDVGILVVNCSVFNPTPSLSAMIINHYKMRGNILSFNLGGMGCSAGIIAVDLARDMLQANPNNYAVVVSTEMVGYNWYPGRDRSM LIPNCFFRMGCSAVLLSNRRRDFRHAKYRLEHIVRTHKGADDRSFRCIYQDEDEQKFKGLKVSKDLVQIGGEALKTNITTLGPLVLPFSEQLLFFTTLIW RHLSGKSNGSPSSPPAKPYIPDYKLAFEHFCVHAASKTVLDELQRNLELSEKNIEASRMTLHRFGNTSSSSVWYELAYLEAKERVKRGDRIWQIAFGSGF KCNSVVWRSMGRVRKPSRNNPWLDSIDRYPVPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Potri.006G218000 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.001G414000 [exp]	2.82	0.9965
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Potri.017G086300 [exp]	3.87	0.9956
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Potri.001G259100 [exp]	4.00	0.9958
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Potri.005G109300 [exp]	6.32	0.9953	MDPIP1.1
AT1G75280			NmrA-like negative transcripti...		Potri.013G103701 [exp]	7.93	0.9923
					Potri.006G028601 [exp]	8.36	0.9937
AT5G58580		ATL63	TOXICOS EN LEVADURA 63 (.1)		Potri.009G073900 [exp]	10.09	0.9662
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.019G001200 [exp]	10.67	0.9930
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G193250 [exp]	15.49	0.9830
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G079400 [exp]	15.87	0.9880

Compare expression of checked genes

Potri.006G218000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.