Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21970 565 / 0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 201 / 1e-58 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 172 / 5e-49 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 170 / 5e-48 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G79120 167 / 4e-47 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 166 / 1e-46 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G08940 160 / 2e-44 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G33495 149 / 2e-40 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G62990 150 / 6e-40 EMB1692 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G06440 140 / 3e-37 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G096800 [exp] 196 / 1e-56 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G169300 [exp] 192 / 2e-55 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 176 / 2e-50 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.001G439100 [exp] 171 / 2e-48 AT1G79120 483 / 2e-170 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G220000 [exp] 169 / 1e-47 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G230900 [exp] 163 / 1e-45 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.016G030300 [exp] 156 / 1e-42 AT5G45790 466 / 8e-163 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.015G141700 [exp] 149 / 8e-40 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G097900 [exp] 144 / 2e-38 AT4G08940 492 / 2e-174 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016529 [exp] 581 / 0 AT5G21970 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10040797 [exp] 511 / 2e-180 AT5G21970 487 / 3e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10029446 [exp] 192 / 2e-55 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10005945 [exp] 188 / 6e-54 AT4G01037 582 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10003062 [exp] 170 / 7e-48 AT2G31290 558 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10034086 [exp] 169 / 2e-47 AT2G31290 559 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10000096 [exp] 154 / 4e-42 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10015979 [exp] 152 / 2e-41 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10000847 [exp] 149 / 8e-41 AT3G58520 501 / 1e-178 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10008711 [exp] 150 / 9e-41 AT4G08940 538 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [poplar] [flax] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Potri.006G218100.1 pacid=42769300 polypeptide=Potri.006G218100.1.p locus=Potri.006G218100 ID=Potri.006G218100.1.v4.1 annot-version=v4.1 ATGGTTACGCAAATTGTTAGAACTTCAATTTTGAGCTATAAATCCAATGGGCCGCAGGTGTTTGCTTATTTGCCTGTGAGAAGAAAATGGCAAAGAGAAA CTTTGTTGGGTTGGTTGCAGAATAGATTGATGACTACAAGTAAGCGAGTGCAGGATAGAAGCACCACGAAAAGGGTGCAGGATCTTGAAATAGTGACAGA GAAATGGAAAATAGTATCAAAAGTGAAGGCAGTGATGGAGATTTTAAATGAGGAGCCAGAGACGATAATCCCAGTAAGGAACCTTGAACGACACAGGATT AAAATCAATCTGCCTAAACCCCATAAAATTTCGGACTTCCTTCGAAAATCGCCAAAGCTTTTTGAATTGTACAAGGATCAAAGGGGAGTGCTATGGTGCG GAATGACAAAAGAAGCTGAGGATTTAGTAGAAGAAGAGGGAAGATTAATCGAGGAGCATTCAGAAAAAGTCGCAGAATATGTGACGAGATGTTTAATGAT GTCTGTTGATAGGCGGCTTCGGTTGGATAAAATAGCAAATTTTAGGAGAGATTTTGGTTTGCCTGTTGATTTTAGGGATAAATGGGTGCATAGGTATCCA GAACTGTTTAAGGTTGTTAAGTTGGTTGATGAAGTAAGTTATTTGGAGCTTGTGTCTTGGAATCCTGATTGGGCTATCACACAGTTAGAGAAGAGAGTAT TAGGGGTGAATGAAAGCAGTAATCATCAGCCGGGAATGCTTTCATTGTCATTTCCTTTGAGATTTCCTTCTAATTACAAGAAGGTGTATAGACATCGAGA GAAAATCGACCATTTTCAGAAAAGGTCTTATTTGTCACCATATGCAGATGCCAAGGGACTTACTGCTGGGTCGTTAGAATTTGATAAGAGGGCTGTTGCC ATTATGCATGAGTTGCTTAGCTTTACCCTTGAGAAGAGATTGGTGACTGATCACCTTACGCATTTTCGGACGGAATTTGTGATGCCACAGAAGTTGATGA GACTTCTTTTAAAGCATATGGGGATTTTCTACGTGTCTGAGAGGGGGAAGAGATTTAGCGTATTTTTGACTGAAGCTTATGAAGGTCAAGAACTGATTGA AAAATGCCCTCTGGTTGTTTGGAAGGAAAAACTCCTGAGTCTTGTTGGTTACAGAGAGAAGAAGAAGAAGATTTTAACATTTGGCGATTTATCGGACTTG GAGGATAGTGGTTTGATTGAGAGTAGTTCTGAACACGAAAATATAAGTATGCATTTTGGGCATGAGGACACGATGGTCGGTGTGGAAGATGCTTTACTTG CAGACAATGATGAGATGAATATTGGAGAAATTGGCCTCGCAGGCTGGAACAGTGAAAAATCTTGA
AA sequence Show only first row Show all	>Potri.006G218100.1 pacid=42769300 polypeptide=Potri.006G218100.1.p locus=Potri.006G218100 ID=Potri.006G218100.1.v4.1 annot-version=v4.1 MVTQIVRTSILSYKSNGPQVFAYLPVRRKWQRETLLGWLQNRLMTTSKRVQDRSTTKRVQDLEIVTEKWKIVSKVKAVMEILNEEPETIIPVRNLERHRI KINLPKPHKISDFLRKSPKLFELYKDQRGVLWCGMTKEAEDLVEEEGRLIEEHSEKVAEYVTRCLMMSVDRRLRLDKIANFRRDFGLPVDFRDKWVHRYP ELFKVVKLVDEVSYLELVSWNPDWAITQLEKRVLGVNESSNHQPGMLSLSFPLRFPSNYKKVYRHREKIDHFQKRSYLSPYADAKGLTAGSLEFDKRAVA IMHELLSFTLEKRLVTDHLTHFRTEFVMPQKLMRLLLKHMGIFYVSERGKRFSVFLTEAYEGQELIEKCPLVVWKEKLLSLVGYREKKKKILTFGDLSDL EDSGLIESSSEHENISMHFGHEDTMVGVEDALLADNDEMNIGEIGLAGWNSEKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G21970			Ubiquitin carboxyl-terminal hy...		Potri.006G218100 [exp]	0	1
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Potri.001G019500 [exp]	2.23	0.9322
AT1G31430			Pentatricopeptide repeat (PPR-...		Potri.003G088600 [exp]	3.16	0.8929
AT1G07740			Tetratricopeptide repeat (TPR)...		Potri.001G020501 [exp]	3.46	0.9006
AT4G14050			Pentatricopeptide repeat (PPR)...		Potri.001G321700 [exp]	4.00	0.9320
AT1G34160			Tetratricopeptide repeat (TPR)...		Potri.005G199800 [exp]	4.47	0.9121
AT3G22690			unknown protein		Potri.010G083700 [exp]	6.92	0.8917
AT1G50910			unknown protein		Potri.011G136400 [exp]	8.66	0.8850
AT1G52640			Pentatricopeptide repeat (PPR)...		Potri.004G102700 [exp]	18.70	0.9001
AT5G40410			Tetratricopeptide repeat (TPR)...		Potri.002G014800 [exp]	21.00	0.8940
AT5G39350			Tetratricopeptide repeat (TPR)...		Potri.004G124400 [exp]	22.75	0.8862

Compare expression of checked genes

Potri.006G218100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.