Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45700 732 / 0 sterile alpha motif (SAM) domain-containing protein (.1) AT3G26680 266 / 5e-81 SNM1, ATSNM1 SENSITIVE TO NITROGEN MUSTARD 1, DNA repair metallo-beta-lactamase family protein (.1.2.3) AT1G66730 214 / 3e-58 AtLIG6 DNA LIGASE 6 (.1) AT1G27410 118 / 4e-28 DNA repair metallo-beta-lactamase family protein (.1) AT1G19025 79 / 4e-15 DNA repair metallo-beta-lactamase family protein (.1) AT1G70180 48 / 2e-05 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) AT5G48680 46 / 4e-05 Sterile alpha motif (SAM) domain-containing protein (.1) AT3G07170 44 / 0.0002 Sterile alpha motif (SAM) domain-containing protein (.1) AT3G48800 43 / 0.0006 Sterile alpha motif (SAM) domain-containing protein (.1) AT5G23680 42 / 0.0008 Sterile alpha motif (SAM) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G139600 [exp] 275 / 4e-84 AT3G26680 556 / 0.0 SENSITIVE TO NITROGEN MUSTARD 1, DNA repair metallo-beta-lactamase family protein (.1.2.3) Potri.004G094200 [exp] 221 / 3e-60 AT1G66730 1656 / 0.0 DNA LIGASE 6 (.1) Potri.013G149650 [exp] 106 / 1e-24 AT1G27410 396 / 5e-137 DNA repair metallo-beta-lactamase family protein (.1) Potri.013G121700 [exp] 90 / 6e-20 AT1G27410 315 / 3e-107 DNA repair metallo-beta-lactamase family protein (.1) Potri.007G106700 [exp] 74 / 1e-13 AT1G19025 571 / 0.0 DNA repair metallo-beta-lactamase family protein (.1) Potri.001G062800 [exp] 50 / 5e-06 AT3G48800 136 / 8e-38 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.003G164600 [exp] 49 / 7e-06 AT3G48800 133 / 5e-37 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.014G190800 [exp] 47 / 1e-05 AT3G07170 218 / 1e-72 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.013G121201 [exp] 44 / 1e-05 AT1G27410 100 / 1e-26 DNA repair metallo-beta-lactamase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038078 [exp] 845 / 0 AT2G45700 767 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Lus10017623 [exp] 221 / 3e-60 AT1G66730 1584 / 0.0 DNA LIGASE 6 (.1) Lus10033580 [exp] 189 / 8e-52 AT1G66730 456 / 1e-146 DNA LIGASE 6 (.1) Lus10013876 [exp] 67 / 4e-11 AT1G19025 478 / 7e-165 DNA repair metallo-beta-lactamase family protein (.1) Lus10016718 [exp] 51 / 2e-06 AT5G23680 173 / 6e-52 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10036012 [exp] 51 / 2e-06 AT5G23680 171 / 4e-51 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10022780 [exp] 45 / 5e-05 AT3G07170 219 / 5e-73 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10038185 [exp] 44 / 0.0001 AT3G07170 234 / 9e-79 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10014516 [exp] 43 / 0.0006 AT1G70180 80 / 1e-16 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0003 [poplar] [flax] SAM PF00536 [poplar] [flax] SAM_1 SAM domain (Sterile alpha motif) CL0398 [poplar] [flax] RMMBL_DRMBL PF07522 [poplar] [flax] DRMBL DNA repair metallo-beta-lactamase CL0381 [poplar] [flax] Metallo-HOrase PF12706 [poplar] [flax] Lactamase_B_2 Beta-lactamase superfamily domain
Representative CDS sequence Show only first row Show all	>Potri.006G218300.1 pacid=42767041 polypeptide=Potri.006G218300.1.p locus=Potri.006G218300 ID=Potri.006G218300.1.v4.1 annot-version=v4.1 ATGTCCTCAAAATTCAATTCGTCCCAATTTTCCTCCCTCGACGACGACGACGACGACTTCCAAATCCCTCTCTCCCAAACACCAAAACAGACTCTTTCTA TCCGCAACAAACCCGCTGACAATCCTCGCCGTCCGTCAAAAAAGCCAAAGAAACCCCCCAATCCCGGCAAAGAAAATATAGATCCCAACTCTCTACTCCT ATATCAGAAAACTGAGTCCGGTGCCAATGACTTCAATTTAGACGAGAATTGCAGTTTGGATTTTATAGAGTCAAGCATCGATTGTACTGTTTCTTCTAAA GTTGGAAACGAGAAATTTGATAGCGGGAGCGGTAAAAAAGAAAAATTGGAAGTGAGTGGAGGATATTTGTGTAATTCGATTGAGGCTAGGTTAATGAAAT CAAGAGTGGATTATAGTGGAGTTAATGTTGGTAATGAAGAGGATTTCGAAGAAAATAGTGAGCTTGATGCCTTAATTAAGTTATGTACCGAGGAAGAAGA AAGTGAAGCTAGAGAGAAAATTAAGGTTAATTGTAATGGCGATGAATGTTGTTTTGTCTTATGTCCGCTTTGTGGGACAGATATTTCGGATTTGAGCGAG GAATTTCGATTAGTTCATACTAACGAGTGCCTGGATAAAGAAGAAAATAGTGTTACATATGTTGTTCTTGGTGGTGATGACGGCAGACCTGAGGTTGTGC CACGAGGCGTGGAGGGTCCTGTTTGTGGTCCGAAGAAAGTTGTTGTGTCACCTGTTGTTAAATGGCTAAGGAATCTGGGTTTAGAGAGATATGAAGAGGA TTTTGTTCGAGAAGAGATTGATTGGGAGACTTTACAGTGGCTGACAGAAGAGGACCTCTTTGGCATTGGTGTCACTGCACTTGGTCCTAGGAAGAAGATT GTGCATGCTCTTAGTGAGCTTAGAAAAGGGTCTAATCACGCAATCGAGGCACATGGAGATGCACACGCCTTTGGTGAAGTTGGTTCACGGAGAAGCCATG GAGCAGAAATGCAAGTAGAGGCTTCTAAAATTATTGGCGATGACACTAGTAAACCAACTGCAAACAAATTGATTACGGATTATTTTCCTGGATCTGTACC TATCAAGAAAAAAACTAGTGTCATCTCTAAAGAACAACGGGGAGCAGAAAAAAGTCAGCCAGGCTATGTTCGTAAACAAGGGGTGAAAAACTATACTAAA AAAGGAAAGTTCAAAGATATTCCTTTGTGGTGTAGCATACCAGGGACACCATTTAGAGTGGATGCTTTCAAATATCTTAGAGGAGATTGTTCCCATTGGT TTCTTACTCACTTCCACATGGACCATTATCAAGGATTAACAAGGTCTTTCTGTCATGGGAAGATTTACTGCTCCTTGATCACAGCAAAGCTTGTAAATTT AAAGATTGGGATCCCTTGGGATAGTTTACATGTTTTACCTCTCAACCAAAAGATCTGTATTGCTGGTGTTGATGTGACATGCTTGGATGCAAACCACTGT CCAGGCTCCATTATAATTCTCTTCGAACCTCCCAATGGTAAGGCTGTGCTACACACGGGAGATTTTCGTTTTTCTGAGAAGATGGTTACAATGCCTGTTT TGCAAATGTCTTCTATCCATACTCTCATCCTTGATACTACATATTGTAATGCCCAGTATGACTTTCCGAAGCAGGAGGCTGTAATACAATTTGTCATTGA GGCCATTCAAGCTGAAGCTTTCAACCCCAAAACACTTTTTTTGATCGGAAGCTATACAATTGGAAAGGAAAGGTTGTTTTTGGAGGTTGCTCGTGTGCTC CATAAGAAGGTTTATGTCAACATGGCAAAATTCCGTCTTTTAGAATGCTTGGGGTTCCCTGAAGAAGATATGAGGTGGATTACATTAAATGAACAAGAAA GCCACATTCATGTTGTGCCTATGTGGACGCTTGCAAGCTTCAAAAGATTGAAACATTTATCGAGTCAATATGCAGGTCGATTCACTCTCATAGTTGCTTT CTCCCCCACTGGCTGGACATTTGGTAAAGGGAAGAAGAAATCTCCAGGGAGAAGGTGTCAGCAGGGAACTATTATAAGATACGAAGTACCATACAGTGAG CATTGCAGTTTTACAGAACTCAGAGAGTTTGTGAAGTTTGTGTCTCCTGAAAACATAATACCAAGTGTAAATAATGATGGACCAGATTCTGCCAATGATA TGGTTTCCCTCCTGCTGTCTTGA
AA sequence Show only first row Show all	>Potri.006G218300.1 pacid=42767041 polypeptide=Potri.006G218300.1.p locus=Potri.006G218300 ID=Potri.006G218300.1.v4.1 annot-version=v4.1 MSSKFNSSQFSSLDDDDDDFQIPLSQTPKQTLSIRNKPADNPRRPSKKPKKPPNPGKENIDPNSLLLYQKTESGANDFNLDENCSLDFIESSIDCTVSSK VGNEKFDSGSGKKEKLEVSGGYLCNSIEARLMKSRVDYSGVNVGNEEDFEENSELDALIKLCTEEEESEAREKIKVNCNGDECCFVLCPLCGTDISDLSE EFRLVHTNECLDKEENSVTYVVLGGDDGRPEVVPRGVEGPVCGPKKVVVSPVVKWLRNLGLERYEEDFVREEIDWETLQWLTEEDLFGIGVTALGPRKKI VHALSELRKGSNHAIEAHGDAHAFGEVGSRRSHGAEMQVEASKIIGDDTSKPTANKLITDYFPGSVPIKKKTSVISKEQRGAEKSQPGYVRKQGVKNYTK KGKFKDIPLWCSIPGTPFRVDAFKYLRGDCSHWFLTHFHMDHYQGLTRSFCHGKIYCSLITAKLVNLKIGIPWDSLHVLPLNQKICIAGVDVTCLDANHC PGSIIILFEPPNGKAVLHTGDFRFSEKMVTMPVLQMSSIHTLILDTTYCNAQYDFPKQEAVIQFVIEAIQAEAFNPKTLFLIGSYTIGKERLFLEVARVL HKKVYVNMAKFRLLECLGFPEEDMRWITLNEQESHIHVVPMWTLASFKRLKHLSSQYAGRFTLIVAFSPTGWTFGKGKKKSPGRRCQQGTIIRYEVPYSE HCSFTELREFVKFVSPENIIPSVNNDGPDSANDMVSLLLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45700			sterile alpha motif (SAM) doma...		Potri.006G218300 [exp]	0	1
AT1G20720			RAD3-like DNA-binding helicase...		Potri.002G008700 [exp]	1.41	0.8739
AT5G05510			Mad3/BUB1 homology region 1 (....		Potri.010G185500 [exp]	1.41	0.8769
AT3G16060			ATP binding microtubule motor ...		Potri.001G182300 [exp]	10.24	0.8066
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.005G251400 [exp]	22.84	0.7743	Pt-CYCB2.2
AT1G78770		APC6	anaphase promoting complex 6 (...		Potri.011G108800 [exp]	23.87	0.7257
AT2G36200			P-loop containing nucleoside t...		Potri.006G210700 [exp]	24.24	0.7937
AT5G01030			Protein of unknown function (D...		Potri.006G093600 [exp]	24.37	0.6997
AT4G27640			ARM repeat superfamily protein...		Potri.008G085800 [exp]	25.09	0.7513
AT5G26910			unknown protein		Potri.005G019700 [exp]	26.07	0.7504
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Potri.001G050300 [exp]	27.34	0.7997

Compare expression of checked genes

Potri.006G218300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.