Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26260 816 / 0 AT3BETAHSD/D2 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) AT1G47290 610 / 0 AT3BETAHSD/D1 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (.1.2) AT2G43420 395 / 8e-132 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) AT2G33630 170 / 1e-46 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G33360 87 / 2e-18 FLDH farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G53500 73 / 3e-13 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT2G45400 71 / 7e-13 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G14790 69 / 3e-12 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G78570 69 / 7e-12 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT2G33590 64 / 6e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G131200 [exp] 390 / 1e-130 AT2G43420 501 / 3e-174 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) Potri.002G005100 [exp] 186 / 1e-52 AT2G33630 738 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G127400 [exp] 87 / 1e-18 AT4G33360 494 / 4e-177 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.002G127500 [exp] 80 / 5e-16 AT4G33360 531 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.009G057600 [exp] 78 / 2e-15 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G272700 [exp] 75 / 6e-14 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.004G030700 [exp] 68 / 4e-12 AT1G61720 443 / 2e-156 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G103700 [exp] 68 / 8e-12 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.002G147601 [exp] 67 / 8e-12 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013413 [exp] 787 / 0 AT2G26260 724 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Lus10010311 [exp] 723 / 0 AT2G26260 664 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Lus10000358 [exp] 325 / 4e-109 AT1G47290 298 / 3e-101 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (.1.2) Lus10013202 [exp] 191 / 4e-54 AT2G33630 714 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10030720 [exp] 187 / 6e-53 AT2G33630 720 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021740 [exp] 91 / 2e-19 AT4G33360 551 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10004797 [exp] 81 / 9e-18 AT2G43420 110 / 1e-28 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) Lus10004028 [exp] 71 / 4e-13 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 71 / 5e-13 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 67 / 7e-12 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [poplar] [flax] Peroxisome PF02453 [poplar] [flax] Reticulon Reticulon CL0063 [poplar] [flax] NADP_Rossmann PF16363 [poplar] [flax] GDP_Man_Dehyd GDP-mannose 4,6 dehydratase
Representative CDS sequence Show only first row Show all	>Potri.006G218400.1 pacid=42768080 polypeptide=Potri.006G218400.1.p locus=Potri.006G218400 ID=Potri.006G218400.1.v4.1 annot-version=v4.1 ATGTCAGGGGAGGAGAGATGGTGTGTGGTGACTGGAGGCAGGGGATTTGCAGCCCGCCATTTAGTAGAAATGCTAATTCAATACGACTTGTTTTCTGTTC GTATAGCCGATTTGGAACCCCAAATTACCCTCTCCACGGAGGAGCAAAATGGAGCCCTCGGTCACGCCTTGAAATCTGGCCGTGCTAACTATGTCTCCGC CGATCTCCGTGACAAACCTCAAGTACTCAAAGTTATTGAAGGAGCTGAAGTCGTGTTCCACATGGCAGCTCCTAATTCGTCTGTTAATAGCCAACAGCTT CACTACTCTGTCAACGTTCAAGGAACAAAGAATGTAATTGATGCATGTGTGGAGCTAAAAGTGAAGAGGCTTATCTATACAAGCTCAGCTAGTGTGGTTT TTGATGGAATTCATGGAATCATTAATGGAGATGAGTCATTGCCTTATACAGATAAGCCTCTCGATTCGTATTCAGCGACTAAAGCAGAAGGTGAGGCTGC GATTCTCAAGGCCAATGGTACTAATGGACTGTTGACATGTAGTTTACGGCCTAGCAGCATATTCGGCCCTGGAGATAGGTTGTTTGTTCCATCTTTGGTT GCTGCTGCAAGGGCTGGGAAATCTAAGTTCATGATTGGTGACGGCAATAACATCTACGATTTCACATATGTTGAAAATGTGGCACATGCCCACATATGTG CCGATCGAGCTCTAGCATCAGAACAAGAGGTTGCAGAGAAAGCGGCTGGGCAGGCATATTTTATAACCAACATGGAGCCCATAAAGTTTTGGGAATTTAC ATCACTTATATTGGAAGGCCTTGGCTATGAGAGACCAAGAATAAAGATTCCCGCCTTTGCTGTGATGCCGATTGCACAAGTGATAGAGTGGATATATAAG ATATTTGGCCCATATGGGATGAAAGTTCCGCAGCTGATACCTTCAAGAATTAGACTACTCTCATGCAGCAGATCTTTTAATTGTTCAAAAGCAAAGGATA GACTTGGTTATGCACCTATTGTACCACTTGAGGAAGGCTTAAAAAGGACGCTTGAGTCATATCCTCACTTAAGGGCTGAAAATCAACCTAAAAGAGAAGG GCCATCTAAAGCCTCCATATGTCTCGGAAGTGGAAAGGTTGCTGATACACTACTTTGGAAGGATAAAAAGCAGACATTGATAACATTGTTAGTTCTGGTT GCAATTTACTACAACTTCATTGCATCTCAGTCCACCATTGTTACTGCTGCTTCAAAGCTTCTCTTGGTGGTATCAGTCTTCTTGTTCATCCATGGAAATT TACCAGAGAAAGTGTTTGGATATACAATTGAAAAAATTCCCATGTCATATTTCAACTTGTCAGAGGAGAGGTCGCACCAAACTGCCCTTTCAGTGGCTTC ATCATGGAATGCTGCTGTTAATGTTTTAAAATCTCTTTGCAAGGGAAATGACTGGTCATTATTCTTCCAGGTGGTGATATCACTATTGATTCTTAGCTTC CTTGGAGCCATTTCATTTCAGACCTTATTTATTATAGGACTTCCTGTTGCTTTTGCTGCATTCTATTTGTATGAGAAAAACGAACAAGCAATTGATTCTA TGTTTTTGGAAGCTCTCTCTTTGGGTTGCAAAATGAAATCTGACATCACCAAAAAGGTACTTGGTTCCAAGAAGAAAGATTGA
AA sequence Show only first row Show all	>Potri.006G218400.1 pacid=42768080 polypeptide=Potri.006G218400.1.p locus=Potri.006G218400 ID=Potri.006G218400.1.v4.1 annot-version=v4.1 MSGEERWCVVTGGRGFAARHLVEMLIQYDLFSVRIADLEPQITLSTEEQNGALGHALKSGRANYVSADLRDKPQVLKVIEGAEVVFHMAAPNSSVNSQQL HYSVNVQGTKNVIDACVELKVKRLIYTSSASVVFDGIHGIINGDESLPYTDKPLDSYSATKAEGEAAILKANGTNGLLTCSLRPSSIFGPGDRLFVPSLV AAARAGKSKFMIGDGNNIYDFTYVENVAHAHICADRALASEQEVAEKAAGQAYFITNMEPIKFWEFTSLILEGLGYERPRIKIPAFAVMPIAQVIEWIYK IFGPYGMKVPQLIPSRIRLLSCSRSFNCSKAKDRLGYAPIVPLEEGLKRTLESYPHLRAENQPKREGPSKASICLGSGKVADTLLWKDKKQTLITLLVLV AIYYNFIASQSTIVTAASKLLLVVSVFLFIHGNLPEKVFGYTIEKIPMSYFNLSEERSHQTALSVASSWNAAVNVLKSLCKGNDWSLFFQVVISLLILSF LGAISFQTLFIIGLPVAFAAFYLYEKNEQAIDSMFLEALSLGCKMKSDITKKVLGSKKKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26260		AT3BETAHSD/D2	3beta-hydroxysteroid-dehydroge...		Potri.006G218400 [exp]	0	1
AT1G16560			Per1-like family protein (.1.2...		Potri.007G065800 [exp]	1.41	0.9120
AT2G20840			Secretory carrier membrane pro...		Potri.019G104000 [exp]	1.41	0.9346
AT1G43580			Sphingomyelin synthetase famil...		Potri.005G193300 [exp]	8.66	0.8799
AT5G01460			LMBR1-like membrane protein (....		Potri.006G100200 [exp]	9.16	0.9056
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Potri.014G067400 [exp]	9.16	0.8986	Pt-TTN1.1
AT3G09735			S1FA-like DNA-binding protein ...		Potri.006G130200 [exp]	9.89	0.8705	S1FA3.1
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.017G057500 [exp]	12.00	0.8904
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Potri.010G254200 [exp]	12.96	0.8983
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Potri.001G214800 [exp]	13.00	0.8921
AT5G04420			Galactose oxidase/kelch repeat...		Potri.010G230300 [exp]	13.03	0.8997

Compare expression of checked genes

Potri.006G218400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.