Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20080 511 / 0 FAD/NAD(P)-binding oxidoreductase (.1) AT5G17770 207 / 1e-65 CBR1, ATCBR NADH:cytochrome B5 reductase 1 (.1) AT1G77760 146 / 6e-39 GNR1, NIA1 nitrate reductase 1 (.1) AT1G37130 145 / 1e-38 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G157000 [exp] 221 / 6e-71 AT5G17770 421 / 3e-150 NADH:cytochrome B5 reductase 1 (.1) Potri.004G194400 [exp] 220 / 2e-70 AT5G17770 428 / 4e-153 NADH:cytochrome B5 reductase 1 (.1) Potri.010G246800 [exp] 213 / 9e-68 AT5G17770 379 / 1e-133 NADH:cytochrome B5 reductase 1 (.1) Potri.013G067300 [exp] 205 / 1e-64 AT5G17770 461 / 6e-166 NADH:cytochrome B5 reductase 1 (.1) Potri.005G172400 [exp] 166 / 6e-46 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.002G088600 [exp] 162 / 1e-44 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030059 [exp] 501 / 2e-180 AT5G20080 516 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1) Lus10014491 [exp] 463 / 6e-166 AT5G20080 475 / 1e-170 FAD/NAD(P)-binding oxidoreductase (.1) Lus10026774 [exp] 226 / 1e-72 AT5G17770 425 / 1e-151 NADH:cytochrome B5 reductase 1 (.1) Lus10008407 [exp] 223 / 3e-71 AT5G17770 427 / 4e-152 NADH:cytochrome B5 reductase 1 (.1) Lus10020310 [exp] 212 / 2e-67 AT5G17770 474 / 5e-171 NADH:cytochrome B5 reductase 1 (.1) Lus10005682 [exp] 212 / 2e-67 AT5G17770 474 / 6e-171 NADH:cytochrome B5 reductase 1 (.1) Lus10033405 [exp] 200 / 1e-62 AT5G17770 359 / 2e-125 NADH:cytochrome B5 reductase 1 (.1) Lus10034869 [exp] 166 / 3e-49 AT5G17770 280 / 3e-94 NADH:cytochrome B5 reductase 1 (.1) Lus10035402 [exp] 155 / 4e-42 AT1G77760 1277 / 0.0 nitrate reductase 1 (.1) Lus10038977 [exp] 150 / 2e-40 AT1G77760 1397 / 0.0 nitrate reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0091 [poplar] [flax] NAD_Ferredoxin PF00175 [poplar] [flax] NAD_binding_1 Oxidoreductase NAD-binding domain CL0076 [poplar] [flax] FAD_Lum_binding PF00970 [poplar] [flax] FAD_binding_6 Oxidoreductase FAD-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G218600.1 pacid=42769276 polypeptide=Potri.006G218650.1.p locus=Potri.006G218600 ID=Potri.006G218600.1.v4.1 annot-version=v4.1 ATGGCTTCTACCTTCTTCAGGAGACTATCTAAGGCCACTCCAGTTTCATTCGGAGGTCAGCCCAAGTCCACTTTTGGAGCAATCGCTGCAGTTACCGGTG GAATCTCTTATTTGTACTACTACAACTCTCCAAATTTGGCTCATTTAGAAGAAGTGAAAGTAGAAGGCAGCCCAAAAGTTGCTCTCAATCCAGATAAATG GATTGAATTTAAGCTGCAAGACACTGCCAGAGTTAGCCATAATACTCATTTATTCAGGTTTTCATTTGATCCTGCTGCAAAGTTGGGTTTAGATATTGCT TCATGCATTATTACAAGGGCTCCAATAGGACAAGATGCTGAAGGAAAAACAAAATATGTTGTGCGCCCGTATACACCTATATCAGACCCAGATTCTAAGG GATATTTTGATTTATTAATCAAGGTGTATCCTGAAGGAAAAATGAGTCAGCATTTCGCTACCTTAAAATCTGGAGATGTTGTTGAAGTGAAAGGGCCCAT TGAAAAGCTCAGATATTCTCCCAATATGAAGAAGCACATTGGCATGATTGCAGGTGGCACAGGCATTACTCCAATGCTTCAAGTAATTGAGGCTATACTG AAGAATCCCGATGACAACACTCAGGTATCGTTGCTTTATGCCAATGTCTCCCCTGATGACATACTTCTTAAACAGAAGCTTGACTTTCTTGCTGCTAGCC ATCCAAATTTAAAGATATTCTACACTGTAGACAATCCATCGAAGAACTGGAAAGGAGGTTCAGGTTTCATATCAAAAGATATGGTTGTGAAAGGCTTACC TGGTCCGTGTGATGATACACTTATCCTGGTGTGTGGACCCCCTGGGATGATGAAACATATATCTGGTGATAAGGCTAAAGATCGTTCACAGGGGGAGCTC ACTGGCCTACTAAAGGAAGCTGGATACACAGAGGAAATGGTTTACAAATTTTAA
AA sequence Show only first row Show all	>Potri.006G218600.1 pacid=42769276 polypeptide=Potri.006G218650.1.p locus=Potri.006G218600 ID=Potri.006G218600.1.v4.1 annot-version=v4.1 MASTFFRRLSKATPVSFGGQPKSTFGAIAAVTGGISYLYYYNSPNLAHLEEVKVEGSPKVALNPDKWIEFKLQDTARVSHNTHLFRFSFDPAAKLGLDIA SCIITRAPIGQDAEGKTKYVVRPYTPISDPDSKGYFDLLIKVYPEGKMSQHFATLKSGDVVEVKGPIEKLRYSPNMKKHIGMIAGGTGITPMLQVIEAIL KNPDDNTQVSLLYANVSPDDILLKQKLDFLAASHPNLKIFYTVDNPSKNWKGGSGFISKDMVVKGLPGPCDDTLILVCGPPGMMKHISGDKAKDRSQGEL TGLLKEAGYTEEMVYKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20080			FAD/NAD(P)-binding oxidoreduct...		Potri.006G218600 [exp]	0	1
AT3G44330			unknown protein		Potri.004G198200 [exp]	4.24	0.9376
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Potri.010G071000 [exp]	5.09	0.9438
AT2G33040		ATP3	gamma subunit of Mt ATP syntha...		Potri.012G066100 [exp]	7.74	0.9295	ATPC.1
AT5G65020		ANNAT2	annexin 2 (.1.2)		Potri.005G075900 [exp]	10.81	0.9137	ANN1.3
AT1G48440			B-cell receptor-associated 31-...		Potri.015G030801 [exp]	12.48	0.9052
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Potri.018G089700 [exp]	14.69	0.9255	Pt-VLN4.2
AT3G53020		RPL24B, STV1	SHORT VALVE1, Ribosomal protei...		Potri.015G141900 [exp]	15.32	0.9286
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.007G040100 [exp]	15.49	0.9048
AT3G52590		HAP4, ERD16, UB...	HAPLESS 4, EARLY-RESPONSIVE TO...		Potri.016G077000 [exp]	19.07	0.9188	UBQ1.1
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Potri.004G163000 [exp]	22.49	0.9002

Compare expression of checked genes

Potri.006G218600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.