Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26270 522 / 0 unknown protein AT3G43930 508 / 6e-177 BRCT domain-containing DNA repair protein (.1.2) AT1G77320 64 / 2e-10 MEI1 meiosis defective 1, transcription coactivators (.1.2) AT4G02110 48 / 2e-05 transcription coactivators (.1) AT2G26267 42 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G182500 [exp] 61 / 2e-09 AT1G77320 1011 / 0.0 meiosis defective 1, transcription coactivators (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038079 [exp] 590 / 0 AT2G26270 393 / 1e-132 unknown protein Lus10009795 [exp] 577 / 0 AT2G26270 397 / 2e-134 unknown protein Lus10028674 [exp] 48 / 3e-06 AT1G77320 209 / 6e-63 meiosis defective 1, transcription coactivators (.1.2) Lus10010017 [exp] 47 / 6e-05 AT4G02110 365 / 3e-108 transcription coactivators (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G218800.1 pacid=42770207 polypeptide=Potri.006G218800.1.p locus=Potri.006G218800 ID=Potri.006G218800.1.v4.1 annot-version=v4.1 ATGGGTGGTGCTGGTGATGGTGGTAGTGGTAGAGTTCAAGTGGTTGATAGTAAAGGGTGTTCAAGGTTGTTTGTGGGGATGTCAGCTTCATTGCCTTCTT TTAGAGGGTTGCAATCCTTTGAGCCAATGTCTCCTGTTACTTCCTCTATTGGGTCTGAGCCTGTCGTGGTTAGATCACATGGTCCATTTGCTGGTCTTGT CATTTGTGTTACCGGTCTATCCAAAGAAGCCAGGAAACAAGTCATGGAAGCAACAGAGAGATTAGGTGGTCAATACAGCCCTAATTTGCATCCTCAGTGT ACCCATTTGGTGGTTCAGAGCTTTGGTGGACGTAAATTCGAGCATGCTTTGAAGCATGGATCTAAAATTGGTCTCTTTGTTGTAACGCTTGGATGGTTTG TGGACAGTGTCAGGAGGAATGTGAGGTTGAGTGAATCACTCTATAGTGTCAAGAGTGTTGGAGAAAATGGTGCACGCTTAGATGAAATGAATCGGCTTGT CGGTTTTACTGGTGCTGAAAATGTTTGTCTTCCTGTTGGTATTAATGATGCCAAGCAATTCAACAAGAGTGAAGGACTGCATCAACTATCTTCTGGAAGA AGTCCTATCAAAAGTATTGGCTTGAACCTGTCTGGCAATTCCATGTATGTTGATTCAGACATTTCAGATGATCTGCGAAGTAGGGTTTATGAGGCAGCTA CAAGAGAAGGTGCCAAGGTTTTAGATCGATGGTTTGTTGGTTGCAGTGCAAGTTATGTAGTGTGTGAAGGGGCTTCTATCCAAAAATACCTTGGCCATTC TAGTAACCTTGTTACTCCACCATGGATTCTGAAAACCGTGAAGGAGAAGCACATGCAGAGGCTTGTTCACATGTCTGCTGATTTGGCCAGACATGTTGGC GTGATGCTGGAAAATTTTCAAAATCACATTACAGAAGAGGAAATGGATGGAAGAAATGTTCCTCAAGATCCACAGAGTTTGAGAGGTAAAGCAAGTCACG AAGAAAGGCTACAGATCGTGAATATTGCTAAGAATGGGGTTAGAAATCGTCGCAGTCATCGTATGCAGACCTGTCAAACCCCAATACGACCAATAACCCC TAGCAGCCTTCTGGATTCAATCTGCTGGTCAATATCTGAGCCAACTTCAACAGCTTCTATTTACACAGACTCTTTTAGTAGCGAAGATGTTAGTGAACAG CATACATCTGTATTTTTTGATGCAAAAGGAGACATCAAGGACTCAGAAGCTTCATTTGCAAACTTAACCCGGCCACTGACGGAGAGTGAGAAAACCGAAT TGATATTTAAGAATCACTTTCTGACTATACTTTTTCCCGTTGACCGATTTTCTGAAATGGGGCCATCTTCAAGAACGTTTTTCAGTGAAAATGGTTTTAC ATGTTTGGAGGTTTTAGATCATATATATGCATTTTATCAGGAGGATATGTCAGGGCAAGAAATAGGAGCTGCTATTCATACTGATTCCAGACATGCTGAC AGGCTTCGATCGGCGTACTCCAGCAAAGAAACATCAGTGCATGGTTATGTGATTTTTAAACGGATTGATTTCTTAGGGAGCCGTAAGAGTTTTGAGATGC TGAAGCGTGTTAGCGGGGATAACAACAGCAATGTATATGAGCTTTTGATTAGAGCATGA
AA sequence Show only first row Show all	>Potri.006G218800.1 pacid=42770207 polypeptide=Potri.006G218800.1.p locus=Potri.006G218800 ID=Potri.006G218800.1.v4.1 annot-version=v4.1 MGGAGDGGSGRVQVVDSKGCSRLFVGMSASLPSFRGLQSFEPMSPVTSSIGSEPVVVRSHGPFAGLVICVTGLSKEARKQVMEATERLGGQYSPNLHPQC THLVVQSFGGRKFEHALKHGSKIGLFVVTLGWFVDSVRRNVRLSESLYSVKSVGENGARLDEMNRLVGFTGAENVCLPVGINDAKQFNKSEGLHQLSSGR SPIKSIGLNLSGNSMYVDSDISDDLRSRVYEAATREGAKVLDRWFVGCSASYVVCEGASIQKYLGHSSNLVTPPWILKTVKEKHMQRLVHMSADLARHVG VMLENFQNHITEEEMDGRNVPQDPQSLRGKASHEERLQIVNIAKNGVRNRRSHRMQTCQTPIRPITPSSLLDSICWSISEPTSTASIYTDSFSSEDVSEQ HTSVFFDAKGDIKDSEASFANLTRPLTESEKTELIFKNHFLTILFPVDRFSEMGPSSRTFFSENGFTCLEVLDHIYAFYQEDMSGQEIGAAIHTDSRHAD RLRSAYSSKETSVHGYVIFKRIDFLGSRKSFEMLKRVSGDNNSNVYELLIRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26270			unknown protein		Potri.006G218800 [exp]	0	1
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Potri.010G221700 [exp]	2.00	0.7656
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.005G222500 [exp]	3.00	0.7592
AT2G41370		BOP2	BLADE ON PETIOLE2, Ankyrin rep...		Potri.006G043400 [exp]	6.70	0.7416
AT3G11760			unknown protein		Potri.010G244100 [exp]	8.00	0.7598
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Potri.002G149600 [exp]	10.39	0.7459
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Potri.006G270401 [exp]	11.61	0.7142
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Potri.011G011101 [exp]	13.67	0.6964
AT5G26010			Protein phosphatase 2C family ...		Potri.006G232700 [exp]	15.23	0.6734
AT2G02960			RING/FYVE/PHD zinc finger supe...		Potri.013G126600 [exp]	16.00	0.6696
AT4G02680		EOL1	ETO1-like 1 (.1)		Potri.005G214400 [exp]	17.66	0.7177

Compare expression of checked genes

Potri.006G218800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.