Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20650 140 / 1e-43 COPT5 copper transporter 5 (.1) AT2G26975 56 / 2e-10 Ctr copper transporter family (.1) AT5G59040 56 / 2e-10 COPT3 copper transporter 3 (.1) AT2G37925 51 / 1e-08 COPT4 copper transporter 4 (.1) AT3G46900 50 / 3e-08 COPT2 copper transporter 2 (.1) AT5G59030 47 / 6e-07 COPT1 copper transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G140700 [exp] 155 / 2e-49 AT5G20650 151 / 7e-48 copper transporter 5 (.1) Potri.006G093300 [exp] 54 / 8e-10 AT2G37925 114 / 3e-33 copper transporter 4 (.1) Potri.009G038700 [exp] 52 / 6e-09 AT2G26975 133 / 2e-40 Ctr copper transporter family (.1) Potri.006G093200 [exp] 49 / 7e-08 AT3G46900 89 / 6e-23 copper transporter 2 (.1) Potri.009G038800 [exp] 45 / 3e-06 AT5G59030 148 / 4e-46 copper transporter 1 (.1) Potri.001G246000 [exp] 44 / 6e-06 AT5G59030 134 / 9e-41 copper transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040925 [exp] 154 / 8e-49 AT5G20650 142 / 2e-44 copper transporter 5 (.1) Lus10009819 [exp] 150 / 2e-47 AT5G20650 147 / 5e-46 copper transporter 5 (.1) Lus10007092 [exp] 149 / 1e-46 AT5G20650 169 / 6e-55 copper transporter 5 (.1) Lus10022671 [exp] 143 / 2e-44 AT5G20650 176 / 2e-57 copper transporter 5 (.1) Lus10012501 [exp] 142 / 5e-44 AT5G20650 177 / 5e-58 copper transporter 5 (.1) Lus10040726 [exp] 59 / 2e-11 AT2G26975 138 / 2e-42 Ctr copper transporter family (.1) Lus10021108 [exp] 49 / 8e-08 AT2G37925 120 / 2e-35 copper transporter 4 (.1) Lus10016464 [exp] 49 / 1e-07 AT5G59030 151 / 1e-47 copper transporter 1 (.1) Lus10017204 [exp] 47 / 3e-07 AT5G59030 88 / 3e-23 copper transporter 1 (.1) Lus10021107 [exp] 47 / 4e-07 AT5G59040 87 / 1e-22 copper transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04145 [poplar] [flax] Ctr Ctr copper transporter family
Representative CDS sequence Show only first row Show all	>Potri.006G219200.1 pacid=42769354 polypeptide=Potri.006G219200.1.p locus=Potri.006G219200 ID=Potri.006G219200.1.v4.1 annot-version=v4.1 ATGATGCACATGACTTTCTATTGGGGCCGGGAGGTGACGATCCTGGTTAACTCATGGCACACAAAGACATGGCTCGGTTACTCTCTCTCTCTACTCGCTT GTCTCATCGCTTCCATCTTCTACCAGTACCTGGAGAACCACCGCATGCGACTCAAACTCATCTCCTCCGGATCTGTGAAAGCGAAACCATCACCATCGGC GACGATCGACGAGCCGCTGCTTCGAACGATGGGTGGTGGAGGAAAAGTGAGGTGGTCTGCCGCGAGAGTGGGAGGAGCTGTGCTTTTTGGGATAAATTCA GGGATCGGGTATCTGTTGATGTTAGTCGTCATGTCGTTTAACGGAGGGGTGTTTTTGGCTGTCGTCTTGGGGTTGGCAATTGGGTATTTGTTATTTAGAA GTGAAGATGAGAATTCGATGCTTCTTGATAATCCCTGTGCTTGTGCTTAG
AA sequence Show only first row Show all	>Potri.006G219200.1 pacid=42769354 polypeptide=Potri.006G219200.1.p locus=Potri.006G219200 ID=Potri.006G219200.1.v4.1 annot-version=v4.1 MMHMTFYWGREVTILVNSWHTKTWLGYSLSLLACLIASIFYQYLENHRMRLKLISSGSVKAKPSPSATIDEPLLRTMGGGGKVRWSAARVGGAVLFGINS GIGYLLMLVVMSFNGGVFLAVVLGLAIGYLLFRSEDENSMLLDNPCACA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20650		COPT5	copper transporter 5 (.1)		Potri.006G219200 [exp]	0	1
AT4G37900			Protein of unknown function (d...		Potri.015G042800 [exp]	3.46	0.6489
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Potri.011G055224 [exp]	3.60	0.6617
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Potri.012G024700 [exp]	9.48	0.6296
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Potri.012G028300 [exp]	18.54	0.6003
AT3G03440			ARM repeat superfamily protein...		Potri.004G088800 [exp]	27.33	0.5408
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Potri.012G018805 [exp]	32.68	0.5297
AT3G08760		ATSIK	Protein kinase superfamily pro...		Potri.016G136400 [exp]	33.22	0.5641
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G108500 [exp]	35.55	0.5544
AT1G23040			hydroxyproline-rich glycoprote...		Potri.010G113300 [exp]	49.19	0.5351
AT5G10770			Eukaryotic aspartyl protease f...		Potri.018G015100 [exp]	89.52	0.4787

Compare expression of checked genes

Potri.006G219200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.