Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05940 536 / 0 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT2G26290 530 / 0 ARSK1 root-specific kinase 1 (.1) AT5G35580 496 / 1e-173 Protein kinase superfamily protein (.1) AT1G72540 450 / 2e-156 Protein kinase superfamily protein (.1) AT5G01020 442 / 8e-154 Protein kinase superfamily protein (.1) AT1G61590 431 / 3e-149 Protein kinase superfamily protein (.1) AT2G07180 414 / 4e-142 Protein kinase superfamily protein (.1.2) AT3G28690 409 / 3e-141 Protein kinase superfamily protein (.1.2.3) AT5G15080 408 / 4e-139 Protein kinase superfamily protein (.1) AT5G56460 404 / 9e-139 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G141500 [exp] 586 / 0 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.003G066300 [exp] 531 / 0 AT2G05940 540 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G168000 [exp] 525 / 0 AT2G05940 519 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.003G105400 [exp] 459 / 3e-160 AT1G61590 597 / 0.0 Protein kinase superfamily protein (.1) Potri.001G128500 [exp] 454 / 2e-158 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 445 / 1e-154 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 444 / 4e-154 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.001G002300 [exp] 418 / 6e-145 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 419 / 6e-144 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027638 [exp] 589 / 0 AT2G05940 529 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10011930 [exp] 586 / 0 AT2G05940 530 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10034897 [exp] 523 / 0 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033429 [exp] 518 / 0 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10013148 [exp] 502 / 8e-177 AT2G05940 484 / 3e-169 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10008110 [exp] 501 / 2e-176 AT2G05940 486 / 2e-170 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033294 [exp] 442 / 2e-154 AT1G61590 552 / 0.0 Protein kinase superfamily protein (.1) Lus10034757 [exp] 441 / 5e-153 AT1G61590 624 / 0.0 Protein kinase superfamily protein (.1) Lus10036762 [exp] 437 / 6e-151 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 415 / 9e-142 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G219300.1 pacid=42768642 polypeptide=Potri.006G219300.1.p locus=Potri.006G219300 ID=Potri.006G219300.1.v4.1 annot-version=v4.1 ATGACCATGAAGAAGGTTACACTAAAATCGATCTTGAGTTGTTGTAGCAGCCCCTTGCCAGAATCCACAAATCGGATCTCAAAACAAGGTTCTTTTCAGA GGCTCTCTCTCTCAGATGTGAGCGATCCCAGTTTACCATTCTGCATAGAAGATATCTCAAATTCTTTCAGTGGCTCAAAACTGCACATATTTACATTTTC AGAGCTAAGAGTTATAACACATAATTTCTCGCGAAGTAATCTTCTTGGTGAAGGCGGGTTTGGACCGGTCTATAAGGGGTTTGTGGATGATAAGCTTAGG CCAGGATTGGATGCCCAGCCTGTAGCTGTGAAGTCACTGGACTTGGATGGCTTGCAAGGACACAAGGAGTGGATGGCAGAAATAATCTTTCTTGGACAAC TGAGACATTCTCATCTAGTCAGGCTGATTGGATATTGCTGCGAGGAGGACCAGAGACTCCTAGTATACGAGTATATGCCAAGAGGCAGCTTAGAGAATCA ACTCTTCAGAAGATATTCCGCTGCATTACCGTGGTCAACCAGGATGAAAATTGCTCTGGGAGCAGCCAAGGGCCTAGCTTTTCTCCATGAATCAGACAAA CCAGTGATATACCGGGATTTTAAATCTTCAAATATCTTGTTGGACTCGGATTACACTGCTAAACTCTCAGACTTCGGACTTGCAAAGGATGGTCCTGAAG GAGAAGAGACACATGTGACAACACGTGTAATGGGCACACAAGGTTATGCTGCGCCTGAGTATATCATGACTGGCCACTTGACAACCATGAGTGATGTGTA CAGCTTTGGCGTAGTTCTGTTGGAGTTGCTTACAGGTAAACGTTCTATGGATAACACCCGCCCTGGTCGAGAGCAAAGCCTTGTGGAATGGGCAAGGCCA CTGTTGAAGGACGCCAGCAAACTTGACAGGATCATGGACCCAAGACTTGAAGGGCAATACTCCACCAAGGGAGCTCAAAAGGCTGCTGCATTAGCTTATA AATGCCTGAGTCATCATCCAAAACCTAGGCCCATGATGAGTCACGTGGTTGAGGTCTTGGAGTCTCTTCAGGGTTTTGATGAAACATTTATTCAACCATT CGTGTACATAGTGCCAACTGAAAATGGAAGCAGCGAGTCTTTAAGCAGAGAAGCAGGAGTGAAAAGTGAAGGAGAAAAGGATGCAACTAATGAAAATGGA TGCCACAATCACAGGCACCATCAACGTTTTGGTTGGAGACAAAGGATCAAACTGCCTTTTTCTCCAGTATCTTATTCGGATCCTGTCCTTTATAAGAATT ATGGAAATGGTTTAAACTCTCCTAGTAGAAAAGAGGTCTAG
AA sequence Show only first row Show all	>Potri.006G219300.1 pacid=42768642 polypeptide=Potri.006G219300.1.p locus=Potri.006G219300 ID=Potri.006G219300.1.v4.1 annot-version=v4.1 MTMKKVTLKSILSCCSSPLPESTNRISKQGSFQRLSLSDVSDPSLPFCIEDISNSFSGSKLHIFTFSELRVITHNFSRSNLLGEGGFGPVYKGFVDDKLR PGLDAQPVAVKSLDLDGLQGHKEWMAEIIFLGQLRHSHLVRLIGYCCEEDQRLLVYEYMPRGSLENQLFRRYSAALPWSTRMKIALGAAKGLAFLHESDK PVIYRDFKSSNILLDSDYTAKLSDFGLAKDGPEGEETHVTTRVMGTQGYAAPEYIMTGHLTTMSDVYSFGVVLLELLTGKRSMDNTRPGREQSLVEWARP LLKDASKLDRIMDPRLEGQYSTKGAQKAAALAYKCLSHHPKPRPMMSHVVEVLESLQGFDETFIQPFVYIVPTENGSSESLSREAGVKSEGEKDATNENG CHNHRHHQRFGWRQRIKLPFSPVSYSDPVLYKNYGNGLNSPSRKEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.006G219300 [exp]	0	1
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.006G089301 [exp]	2.44	0.8216
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Potri.016G074100 [exp]	2.44	0.7843
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Potri.014G002400 [exp]	8.48	0.6560
AT2G14110			Haloacid dehalogenase-like hyd...		Potri.017G043900 [exp]	13.19	0.7267
AT5G48485		DIR1	DEFECTIVE IN INDUCED RESISTANC...		Potri.009G112553 [exp]	14.31	0.6515
AT1G09560		GLP5	germin-like protein 5 (.1)		Potri.013G000500 [exp]	14.69	0.7513	GER1.2
AT1G14590			Nucleotide-diphospho-sugar tra...		Potri.012G037300 [exp]	15.16	0.7053
AT2G25790			Leucine-rich receptor-like pro...		Potri.006G237400 [exp]	18.57	0.6651
AT1G16670			Protein kinase superfamily pro...		Potri.010G221400 [exp]	19.59	0.6976
AT1G15890			Disease resistance protein (CC...		Potri.001G172300 [exp]	24.59	0.7048

Compare expression of checked genes

Potri.006G219300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.