Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GPA1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26300 645 / 0 ATGPA1, GPALPHA1, GPA1 ,GP ALPHA 1 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) AT1G31930 192 / 2e-54 XLG3 extra-large GTP-binding protein 3 (.1.2.3) AT2G23460 155 / 3e-41 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT4G34390 128 / 5e-32 XLG2 extra-large GTP-binding protein 2 (.1) AT4G02080 40 / 0.001 ASAR1, ATSARA1C, ATSAR2 secretion-associated RAS super family 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G048600 [exp] 687 / 0 AT2G26300 659 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Potri.001G135300 [exp] 207 / 9e-60 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 204 / 1e-58 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.012G042500 [exp] 177 / 6e-49 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.015G031100 [exp] 172 / 4e-47 AT1G31930 961 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.007G035200 [exp] 156 / 1e-41 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.005G131200 [exp] 151 / 8e-40 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.009G109400 [exp] 148 / 7e-39 AT2G23460 807 / 0.0 extra-large G-protein 1 (.1) Potri.004G148300 [exp] 143 / 4e-37 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004784 [exp] 644 / 0 AT2G26300 665 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10003115 [exp] 643 / 0 AT2G26300 663 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10010421 [exp] 177 / 1e-48 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10012124 [exp] 173 / 2e-47 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10000743 [exp] 161 / 1e-43 AT2G23460 975 / 0.0 extra-large G-protein 1 (.1) Lus10019655 [exp] 160 / 6e-43 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1) Lus10021012 [exp] 157 / 3e-42 AT2G23460 769 / 0.0 extra-large G-protein 1 (.1) Lus10023838 [exp] 158 / 4e-42 AT2G23460 836 / 0.0 extra-large G-protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00503 [poplar] [flax] G-alpha G-protein alpha subunit
Representative CDS sequence Show only first row Show all	>Potri.006G219500.1 pacid=42768332 polypeptide=Potri.006G219500.1.p locus=Potri.006G219500 ID=Potri.006G219500.1.v4.1 annot-version=v4.1 ATGCTGTCTATTATAACACAAAATATGGGCTCACTCTGCAGTAAACAGCGGCGATGTAATGAAGCAGATGCTGAAGAGAATGCACAAGCTGCAGAAATCG AAAGGCGAATTGAACAAGAAACCAAAGCTGAAAAGCATATTCAAAAACTTCTGCTTCTTGGTGCTGGAGACTCTGGGAAGTCAACGATTTTCAAGCAGAT AAAACTTTTGTTTCAAAGTGGTTTTGACGAGGCAGAGCTCAAGAGCTATATTCCAGTCATCCATGCCAACGTCTACCAGACAATAAAAATTTTGCATGAT GGATCAAAAGAATTGGCTCAAAATGAAACAGATTCCTTGAAGTATGTTATATCCAATGAAAACAAGGATATTGGGAAGAAATTGTCGGAAATTGGAGGCA GGTTGGATCATCCGCGTCTCACCAAAGAACTAGCCCAGGAGATTGAAACTCTATGGAGAGATGCTGCAGTTCAGGAAACATATGCCTGTGGTCATAAGCT CCAAGTTCCAGATTGTACCCCTTATTTCATGGATAATTTGCAAAGATTATCTGACTCAAACTATATTCCAACTAAGGAGGATGTTCTTTATGCAAGAGTC CGTACAACAGGTGTTGTAGAGATCCAATTCAGTCCTGTTGGAGAAAACAAGAAAAGTGGGGAAGTATATAGACTTTTTGATGTTGGTGGGCAGAGAAATG AGAGGCGGAAATGGATTCATCTATTTGAAGGTGTTACAGCAGTAATTTTTTGCGCTGCAATTAGCGAGTATGATCAAACACTGTTCGAGGATGAAAACAA GAATCGAATGATTGAGACAAAGGAGCTGTTTGAGTGGGTCCTGAAGCAACCATGCTTTGAGAAAACATCCTTCATGCTGTTTCTAAACAAGTTTGATATA TTTGAAAAGAAAGTTCTAAAAGCACCATTGAATGCATGCGAGTGGTTCAAGGACTACCAGCCAATTTCGACAGGAAAACAAGAGATTGAGCATGCATATG AGTTTGTAAAGAAGAAGTTCGAGGAGCTGTATTTCCAAAGCACAACCCCTGATCGTGTTGACCGAGTTTTTAAAATATATAGAACCACTGCACTTGATCA GAAGCTTGTCAAGAAAACCTTCAAGCTTGTAGACGAGACTTTAAGACGCAGGAATCTCTTTGAAGCTGGTTTATTGTGA
AA sequence Show only first row Show all	>Potri.006G219500.1 pacid=42768332 polypeptide=Potri.006G219500.1.p locus=Potri.006G219500 ID=Potri.006G219500.1.v4.1 annot-version=v4.1 MLSIITQNMGSLCSKQRRCNEADAEENAQAAEIERRIEQETKAEKHIQKLLLLGAGDSGKSTIFKQIKLLFQSGFDEAELKSYIPVIHANVYQTIKILHD GSKELAQNETDSLKYVISNENKDIGKKLSEIGGRLDHPRLTKELAQEIETLWRDAAVQETYACGHKLQVPDCTPYFMDNLQRLSDSNYIPTKEDVLYARV RTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDENKNRMIETKELFEWVLKQPCFEKTSFMLFLNKFDI FEKKVLKAPLNACEWFKDYQPISTGKQEIEHAYEFVKKKFEELYFQSTTPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLFEAGLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Potri.006G219500 [exp]	0	1	Pt-GPA1.2
AT5G08630			DDT domain-containing protein ...		Potri.019G008541 [exp]	4.47	0.6608
AT1G78440		ATGA2OX1	Arabidopsis thaliana gibberell...		Potri.011G095600 [exp]	4.58	0.7039	GA2ox6,GA2.8
AT5G61910			DCD (Development and Cell Deat...		Potri.012G108200 [exp]	5.09	0.6889	Pt-BON1.3
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.005G014900 [exp]	5.19	0.6882
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.007G110901 [exp]	6.48	0.6535
AT1G11950			Transcription factor jumonji (...		Potri.004G006200 [exp]	13.63	0.6560
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Potri.005G141400 [exp]	15.16	0.6388	Pt-WRKY15.2
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Potri.010G132200 [exp]	18.16	0.5952
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Potri.015G137900 [exp]	21.49	0.6115
AT5G36930			Disease resistance protein (TI...		Potri.010G231200 [exp]	21.72	0.6520

Compare expression of checked genes

Potri.006G219500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.