Plant FIBer expression Database

Potri.006G219600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26310 407 / 1e-140 Chalcone-flavanone isomerase family protein (.1.2.3)
AT3G63170 132 / 2e-35 Chalcone-flavanone isomerase family protein (.1)
AT1G53520 47 / 1e-05 Chalcone-flavanone isomerase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G048500
[exp]
750 / 0 AT2G26310 389 / 3e-133 Chalcone-flavanone isomerase family protein (.1.2.3)
Potri.002G052200
[exp]
130 / 2e-34 AT3G63170 290 / 2e-98 Chalcone-flavanone isomerase family protein (.1)
Potri.011G101800
[exp]
54 / 8e-08 AT1G53520 282 / 4e-95 Chalcone-flavanone isomerase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042592
[exp]
127 / 1e-33 AT3G63170 298 / 2e-101 Chalcone-flavanone isomerase family protein (.1)
Lus10022046
[exp]
126 / 3e-33 AT3G63170 296 / 1e-100 Chalcone-flavanone isomerase family protein (.1)
Lus10022045
[exp]
120 / 8e-31 AT3G63170 283 / 7e-96 Chalcone-flavanone isomerase family protein (.1)
Lus10042591
[exp]
119 / 3e-30 AT3G63170 274 / 5e-92 Chalcone-flavanone isomerase family protein (.1)
Lus10032083
[exp]
83 / 1e-17 AT3G63170 140 / 3e-40 Chalcone-flavanone isomerase family protein (.1)
Lus10014620
[exp]
69 / 3e-13 AT3G63170 112 / 3e-30 Chalcone-flavanone isomerase family protein (.1)
Lus10026174
[exp]
47 / 2e-05 AT1G53520 259 / 3e-84 Chalcone-flavanone isomerase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0560 Chalcone-like PF16036 Chalcone_3 Chalcone isomerase-like
Representative CDS sequence
>Potri.006G219600.3 pacid=42769867 polypeptide=Potri.006G219600.3.p locus=Potri.006G219600 ID=Potri.006G219600.3.v4.1 annot-version=v4.1
ATGAGGAACAATTGGTTGTTGTTCATGGATTTAAATGGAGAATCTCAATATACGTTTCCCTTAGAACCCCTATTGTCACAAGGATTTGGGGCTATTCTCT
TTTCTCAAATTAGTTCATTTGTTGACAACCCGTTGCACCAATCGGGATTCTTACATGTCCCTGAAACAATGGCTTTTCAAGAAGCTTTGAACCACGTGTC
GAAGCTTGCTGGTGGTTTGATTTTTTGGTTCACTAGCGCATCCAGTTCAAATTTGAGTCGGCAAATATCAGGCAATCAGCGTTCTCCCCGACCAGGAAGC
TGTAAATCTCCTGCACAAGTTAAGAACTCTACTTCTACTAGACATGATCTTGCTGGGTTAGGCTTCGGTTCCATATCAAAAGGAGAATCTTCACATCCTG
TGGTTTTTAGTAAGATTTCAAATTTCGTGATGAGGCTTCTACACAGGGAAGCTGAAAGACGTCAATCATTCCCTGTGCTCTCATTAGCTGCTGCTCTGAT
ACCACCATTTGGCAACTTATCTTCAAAGTTACTAGCTATTCCTGGGGAGAATGACGATGTACCAGTACATGCATCCACTGGTCAAAGGCCTTGTGAAGTT
GAGCGTTCTGGATGTCCAGGCCTCTCATTTCCTGATTTAAACTGGACAAGGCATGCTGTTGAGCCCAGAACGGGCATTGAGTTCCCAATGCTTTTGGACA
TCTTAGCTGGGCAGAATAGATCTAGATTAACTTCAGAGGTCCTTGTTGCCACTGGATCCAGAACTATGACAATAATCAGAATAAAGACTCTGAAGATTTA
TGCATTTGGTTTTTATGTTCATCCTAATTCTGTCTGCAAAAAACTGGGCCCAAAGTATGCTTCCGTTCCAATGGGTGAATTAAATAAACGCCGTGACTTT
TACGAGGATCTTCTCAGGGAAGACATCTCCATGACTGTTCGACTTGTGATTAACTGCAATGGGATTAAAATCAACACTGTTAAAGATGCCTTTGAAAAAT
CACTTCGAAACCGTTTGGCAAAGACGAACCCGGACACTGATTACAATTGCCTGACAACATTTGGTTCATTCTTCACAAAAGATGTCCCACTACCTGTGGG
AACAGTAGTTGATTTTCGAAGAACAGCTGATGGGCAACTAATAACTGAAATTGGAGGTAACCAAATTGGAGCAGTTCGTAGCAAAGATTTATGTAGGGCT
TTCTTTGACATGTACATAGGAGATATTCCTGTCTCAGAGCAAACTAAGGAAGAGATTGGCAAGAATGTTGCCTGCATTATTGGGAAGTGCTAA
AA sequence
>Potri.006G219600.3 pacid=42769867 polypeptide=Potri.006G219600.3.p locus=Potri.006G219600 ID=Potri.006G219600.3.v4.1 annot-version=v4.1
MRNNWLLFMDLNGESQYTFPLEPLLSQGFGAILFSQISSFVDNPLHQSGFLHVPETMAFQEALNHVSKLAGGLIFWFTSASSSNLSRQISGNQRSPRPGS
CKSPAQVKNSTSTRHDLAGLGFGSISKGESSHPVVFSKISNFVMRLLHREAERRQSFPVLSLAAALIPPFGNLSSKLLAIPGENDDVPVHASTGQRPCEV
ERSGCPGLSFPDLNWTRHAVEPRTGIEFPMLLDILAGQNRSRLTSEVLVATGSRTMTIIRIKTLKIYAFGFYVHPNSVCKKLGPKYASVPMGELNKRRDF
YEDLLREDISMTVRLVINCNGIKINTVKDAFEKSLRNRLAKTNPDTDYNCLTTFGSFFTKDVPLPVGTVVDFRRTADGQLITEIGGNQIGAVRSKDLCRA
FFDMYIGDIPVSEQTKEEIGKNVACIIGKC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G26310 Chalcone-flavanone isomerase f... Potri.006G219600
[exp]
0 1
AT1G22360 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 ... Potri.002G098400
[exp]
7.74 0.9304 AT2.2
Potri.014G135560
[exp]
7.81 0.8742
AT5G60700 glycosyltransferase family pro... Potri.004G212000
[exp]
8.00 0.9268
AT5G50080 AP2_ERF ERF110 ethylene response factor 110 ... Potri.002G065600
[exp]
10.58 0.9169
AT2G27690 CYP94C1 "cytochrome P450, family 94, s... Potri.009G145400
[exp]
11.22 0.9080 CYP94C5,Pt-CYP94.4
AT5G57500 Galactosyltransferase family p... Potri.018G094000
[exp]
13.26 0.9118
AT4G33000 SCABP8, ATCBL10... SOS3-LIKE CALCIUM BINDING PROT... Potri.006G230200
[exp]
14.24 0.8045
AT3G20340 unknown protein Potri.011G003100
[exp]
15.09 0.9276
AT5G03980 SGNH hydrolase-type esterase s... Potri.005G024900
[exp]
15.65 0.8816
AT5G16600 MYB ATMYB43 myb domain protein 43 (.1) Potri.017G130300
[exp]
18.16 0.8268 Pt-MYB20.1,MYB152

Potri.006G219600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.