Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43860 689 / 0 ATGH9A4 glycosyl hydrolase 9A4 (.1) AT4G09740 456 / 1e-157 ATGH9B14 glycosyl hydrolase 9B14 (.1) AT4G23560 448 / 2e-154 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT1G02800 448 / 3e-154 ATCEL2 cellulase 2 (.1) AT4G02290 439 / 3e-150 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT4G11050 431 / 1e-145 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT1G64390 424 / 3e-143 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT2G32990 420 / 8e-143 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT1G71380 398 / 6e-135 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT1G23210 395 / 9e-134 ATGH9B6 glycosyl hydrolase 9B6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G098800 [exp] 470 / 2e-162 AT4G09740 669 / 0.0 glycosyl hydrolase 9B14 (.1) Potri.002G202400 [exp] 437 / 2e-149 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G157600 [exp] 437 / 2e-149 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.014G126900 [exp] 436 / 4e-149 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G092200 [exp] 427 / 2e-144 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.003G139600 [exp] 422 / 4e-142 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.015G127900 [exp] 417 / 4e-142 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1) Potri.019G069300 [exp] 412 / 2e-140 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Potri.001G356000 [exp] 411 / 2e-139 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038075 [exp] 677 / 0 AT3G43860 686 / 0.0 glycosyl hydrolase 9A4 (.1) Lus10009794 [exp] 676 / 0 AT3G43860 684 / 0.0 glycosyl hydrolase 9A4 (.1) Lus10017525 [exp] 457 / 2e-157 AT4G09740 645 / 0.0 glycosyl hydrolase 9B14 (.1) Lus10008208 [exp] 451 / 5e-155 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10038223 [exp] 429 / 1e-146 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10001833 [exp] 430 / 2e-145 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10032377 [exp] 428 / 2e-144 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10003888 [exp] 423 / 9e-143 AT1G64390 960 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10009724 [exp] 416 / 5e-141 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10035316 [exp] 410 / 6e-139 AT2G32990 751 / 0.0 glycosyl hydrolase 9B8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00759 [poplar] [flax] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Potri.006G219700.2 pacid=42768122 polypeptide=Potri.006G219700.2.p locus=Potri.006G219700 ID=Potri.006G219700.2.v4.1 annot-version=v4.1 ATGGGTACCTCAATGAGATCATGGATGGCCGTTTTGATCATGGTTTGGCTTACTCTCGTTCAAGGAATTTTTGTGGCTGTTGATGCTACTTTTAACTACA AGGATGCCCTTACTAAGTCTATTATTTTCCTAGAAGCACAAAGATCAGGAAAACTTCCTCCAAACCACAGGCCACAATGGAGAGGAGATTCTGGCCTCGA CGATGGTAAACTTGCAAATGTGGACCTTGTTGGGGGATATTATGATGCAGGAGACAATGTGAAATATGGACTGCCAATGGCTTTTACTGTTACCACTCTG GCTTGGGGTGCTCTCGCTTATCACAAAGAGCTCCATGCCACAGGCGAGCTGCCCCATGTACGTTCTGCCATTAAATGGGGCACAGATTATTTTCTTAAAG CCAGTTCCAGGAAGAACCGTTTGTACGTGCAGGTGGGAGACCCAGTGCTGGATCATCAATGTTGGGTTAGACCAGAAAATATGAGGACACCAAGAACTGT GTTGAGGATTGATGAGAATAACCCGGGAACAGAGATTGCAGCTGAAACTTCAGCTGCAATGGCTGCTGCTTCCATTGTTTTTCGACACACTAATCGTACC TATTCCCGTAGACTCCTCAACAAAGCCAAGTTGCTGTTTGAATTTGCTAAAACACACAAGAAAACCTTTGATGGAGAATGCCCATTTTATTGCTCTTTCT CAGGCTACAATGATGAGCTGTTGTGGTCAGCAACATGGTTGTACAAGGCCACCACTAAGCCTATGTACTTAAAGTACATCAAAGAAGAAGCCACTAGTGC TGCTGTGGCTGAGTTTAGCTGGGACCTTAAATACGCTGGAGCCCAAGTCCTCCTCTCTAAGCTGTATTTTGAGGGAGTGAAGGATTTGGAATCCTATAAG AAAGACGCTGACAGTTTTATATGCTCAGTGCTGCCTGGTAGCCCCTTCCATCAAGTATATATCTCTCCTGGTGGTATGATTAACTTGAGAGATGGGGCCA ACACTCAATATGTTACCAGCACAGCTTTCTTGTTTAGCGTCTACAGTGATATCCTTGCCGAACACAATCAAAAAGTACAGTGTGGAAACCAAGCATTTGA CTCTACCCGCGTCATGGCATTCGCCAAGCAACAGATAGATTACTTGCTAGGGAGCAACCCTGAAAAAAGATCATATATGGTAGGGTTTGGACACAATCCA CCAGTGCAAGCACACCATAGAGGCGCTTCTGTTCCAGTGATGTCTACTAATACAATAGTGAACTGTGGCACGAGCTTTGCTAACTGGTTCAACAAGGATG CACCAAACCCTCATGAACTAACTGGTGCCTTTGTGGGTGGACCTGACCGGTTCGACAACTTTGTTGATAAGCGTTGGGATTCATCTAAAACCGAGCCTTG CACGTACGTTAACTCTATTTCAGTTGGTGTTTTGGCAAAGCTTGCAACAGATGGCCGTGTCTAG
AA sequence Show only first row Show all	>Potri.006G219700.2 pacid=42768122 polypeptide=Potri.006G219700.2.p locus=Potri.006G219700 ID=Potri.006G219700.2.v4.1 annot-version=v4.1 MGTSMRSWMAVLIMVWLTLVQGIFVAVDATFNYKDALTKSIIFLEAQRSGKLPPNHRPQWRGDSGLDDGKLANVDLVGGYYDAGDNVKYGLPMAFTVTTL AWGALAYHKELHATGELPHVRSAIKWGTDYFLKASSRKNRLYVQVGDPVLDHQCWVRPENMRTPRTVLRIDENNPGTEIAAETSAAMAAASIVFRHTNRT YSRRLLNKAKLLFEFAKTHKKTFDGECPFYCSFSGYNDELLWSATWLYKATTKPMYLKYIKEEATSAAVAEFSWDLKYAGAQVLLSKLYFEGVKDLESYK KDADSFICSVLPGSPFHQVYISPGGMINLRDGANTQYVTSTAFLFSVYSDILAEHNQKVQCGNQAFDSTRVMAFAKQQIDYLLGSNPEKRSYMVGFGHNP PVQAHHRGASVPVMSTNTIVNCGTSFANWFNKDAPNPHELTGAFVGGPDRFDNFVDKRWDSSKTEPCTYVNSISVGVLAKLATDGRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Potri.006G219700 [exp]	0	1
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Potri.012G060700 [exp]	2.00	0.9382
AT5G12060			Plant self-incompatibility pro...		Potri.006G170200 [exp]	2.64	0.7698
					Potri.005G022400 [exp]	5.74	0.7440
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.009G091950 [exp]	6.32	0.7692
AT5G12180		CPK17	calcium-dependent protein kina...		Potri.001G274700 [exp]	7.07	0.7571
					Potri.004G065750 [exp]	8.36	0.7080
AT3G02645			Plant protein of unknown funct...		Potri.017G124100 [exp]	9.48	0.6727
					Potri.009G026850 [exp]	9.74	0.6673
AT4G38140			RING/U-box superfamily protein...		Potri.004G209600 [exp]	10.09	0.7042
AT2G04220			Plant protein of unknown funct...		Potri.007G101000 [exp]	10.95	0.5596

Compare expression of checked genes

Potri.006G219700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.