Plant FIBer expression Database

Potri.006G219750 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G006700
[exp]
0 / 1 AT1G55320 1078 / 0.0 acyl-activating enzyme 18 (.1.2)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G219750.1 pacid=42770091 polypeptide=Potri.006G219750.1.p locus=Potri.006G219750 ID=Potri.006G219750.1.v4.1 annot-version=v4.1
ATGATTGTTTTAAGATTTAATCAAGGAGGAACCACACTTCTTCTCTTTTGCAGTCGCGTTGTGGAAGCTAATCCTTGCATGGCAATTGTGATCCCTGTGA
TTGGAGAGGATGTAGGGCCTCAATTAAGAAATTGGAGATCATACATGGATAGATTTTTTATCTGGACTCAATCACCTACCAAGGTTATCTACTGGCCTGA
ATCAAGGGATCCGAAATGTAGCAAAAATCCAGCTTTGAAGGACAGCACTACATTTCGAGAGGGACAGTATTGGATTATATCAGCGACACACATGCAGGAG
TTATTACCTAAAATAACTTTCCAAACGCATGGCCAAGAGGAGACCCATGGAAGACGGTGGAGGGGTATGGCTTGGAGCACAAGTGCCCTCACAAGACTTG
TGCGGTTGTGCCTTTTGCTTTGGCTAGTGTCCTTTCGGATCTGA
AA sequence
>Potri.006G219750.1 pacid=42770091 polypeptide=Potri.006G219750.1.p locus=Potri.006G219750 ID=Potri.006G219750.1.v4.1 annot-version=v4.1
MIVLRFNQGGTTLLLFCSRVVEANPCMAIVIPVIGEDVGPQLRNWRSYMDRFFIWTQSPTKVIYWPESRDPKCSKNPALKDSTTFREGQYWIISATHMQE
LLPKITFQTHGQEETHGRRWRGMAWSTSALTRLVRLCLLLWLVSFRI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G219750
[exp]
0 1
AT3G11570 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 ... Potri.006G208251
[exp]
3.87 0.8456
AT1G01720 NAC ATAF1, ANAC002 Arabidopsis NAC domain contain... Potri.018G095000
[exp]
4.47 0.8614
AT3G62240 C2H2ZnF RING/U-box superfamily protein... Potri.005G004600
[exp]
13.07 0.8384
AT2G35790 unknown protein Potri.008G042800
[exp]
14.42 0.8400
AT1G11580 ATPMEPCRA methylesterase PCR A (.1) Potri.011G025400
[exp]
14.49 0.8414
AT5G67265 unknown protein Potri.002G122800
[exp]
16.97 0.8231
AT4G02390 ATPARP1, APP POLY\(ADP-RIBOSE\) POLYMERASE ... Potri.014G128000
[exp]
19.74 0.8423
AT2G21490 LEA dehydrin LEA (.1) Potri.004G158500
[exp]
21.02 0.8186
AT3G06520 agenet domain-containing prote... Potri.010G149301
[exp]
21.16 0.7457
AT5G19790 AP2_ERF RAP2.11 related to AP2 11 (.1) Potri.002G153500
[exp]
21.33 0.8282 ERF89

Potri.006G219750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.