Plant FIBer expression Database

Potri.006G219800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G21940 135 / 2e-38 unknown protein
AT3G43850 109 / 3e-28 unknown protein
AT2G24550 60 / 2e-10 unknown protein
AT5G24890 57 / 3e-09 unknown protein
AT4G31510 50 / 3e-07 unknown protein
AT5G56550 47 / 2e-06 ATOXS3 oxidative stress 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G048100
[exp]
286 / 3e-97 AT5G21940 110 / 4e-29 unknown protein
Potri.006G273100
[exp]
68 / 3e-13 AT5G24890 129 / 1e-36 unknown protein
Potri.018G008200
[exp]
67 / 7e-13 AT5G24890 131 / 3e-37 unknown protein
Potri.001G190700
[exp]
48 / 2e-06 AT5G56550 81 / 4e-19 oxidative stress 3 (.1)
Potri.009G120300
[exp]
40 / 0.0003 AT4G26288 45 / 2e-06 unknown protein
Potri.004G158800
[exp]
40 / 0.0003 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009793
[exp]
88 / 2e-20 AT5G24890 51 / 1e-07 unknown protein
Lus10038073
[exp]
85 / 1e-19 AT3G43850 50 / 4e-07 unknown protein
Lus10026939
[exp]
72 / 2e-14 AT2G24550 116 / 4e-31 unknown protein
Lus10020142
[exp]
68 / 5e-13 AT2G24550 113 / 9e-30 unknown protein
Lus10025837
[exp]
47 / 2e-06 AT5G56550 65 / 2e-13 oxidative stress 3 (.1)
Lus10038265
[exp]
47 / 2e-06 AT5G56550 66 / 9e-14 oxidative stress 3 (.1)
Lus10011137
[exp]
42 / 0.0001 AT5G56550 74 / 2e-16 oxidative stress 3 (.1)
Lus10034985
[exp]
42 / 0.0002 AT5G56550 81 / 3e-19 oxidative stress 3 (.1)
Lus10012939
[exp]
41 / 0.0004 AT5G56550 81 / 3e-19 oxidative stress 3 (.1)
Lus10043039
[exp]
40 / 0.0007 AT5G56550 69 / 1e-14 oxidative stress 3 (.1)
PFAM info
Representative CDS sequence
>Potri.006G219800.3 pacid=42769836 polypeptide=Potri.006G219800.3.p locus=Potri.006G219800 ID=Potri.006G219800.3.v4.1 annot-version=v4.1
ATGAAAATAGCAGTGGATCATAATAGTTGTAATAGCGAAAGAATAGGGTGTTTGGCGACCTCGTCGGTGGAGAGGAGGAAGGAGATGGCGGAGGAGTGTA
GTCCGTCGTCTTCGACGACATCTTCTTCGTCGTCGATCGGGAAAAATAGTGATCTAACGGATGGTGGAGAAGATGGGTTGGAGGAAAATGAGGTGCAAAG
TGCATATAAAGGGACTCTTGATTCCATGGAGGCTTTAGAGGAGGTCTTGCCTATCAGGAGAGGTATATCAAATTTCTATAATGGCAAATCAAAGTCTTTC
ACAAGCCTGTCTGATGCGTCCTCTTCTCCCTCCATAAAAGACATTGCAAAACCAGAGAATGCGTATACGAGGAAACGCAGAAACCTGCTTGCTTTCTCTC
ATGTTTGGGAGAAGACCAGGAGTTTCCCTTACCGAAGTGGGATAGCAAAGAGACCGATTAGCAATAGCAAAAGCACATTGGCTTTAGCAGTTGCCATGAG
CAGTTCTGAAAGCATCAGTAGTGCTAGCGAGGATTCGACTTCAACTTCAAAGTCTCCCCCAAATCTTCCACCTCTGCACCCAAGATCCAGGGCTTCTCAT
AACAATCTAACCTCGTTACCATCCCCACGACAAAATTTTTCTCCCTGGCGGTCGTTCTCTTTGGCTGATTTGCAACAGTGTACCATGGGAAATGTTTTCT
CGTTTTTCATGGTGCTTGCCCCATGTGCTTGTTTTGAGTTGATGGAATGCCTAAAGGAATACGAATCTTCTCTCGTTCTGTTTTTATCTTTTTGTGATGC
TGTTAGGTCTTCAACTACAACCATACGATGCTAG
AA sequence
>Potri.006G219800.3 pacid=42769836 polypeptide=Potri.006G219800.3.p locus=Potri.006G219800 ID=Potri.006G219800.3.v4.1 annot-version=v4.1
MKIAVDHNSCNSERIGCLATSSVERRKEMAEECSPSSSTTSSSSSIGKNSDLTDGGEDGLEENEVQSAYKGTLDSMEALEEVLPIRRGISNFYNGKSKSF
TSLSDASSSPSIKDIAKPENAYTRKRRNLLAFSHVWEKTRSFPYRSGIAKRPISNSKSTLALAVAMSSSESISSASEDSTSTSKSPPNLPPLHPRSRASH
NNLTSLPSPRQNFSPWRSFSLADLQQCTMGNVFSFFMVLAPCACFELMECLKEYESSLVLFLSFCDAVRSSTTTIRC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G21940 unknown protein Potri.006G219800
[exp]
0 1
AT1G52720 unknown protein Potri.001G174300
[exp]
4.79 0.7108
AT5G21940 unknown protein Potri.018G048100
[exp]
7.93 0.7786
AT4G27450 Aluminium induced protein with... Potri.011G049900
[exp]
15.13 0.8224
AT4G16130 ATISA1, ARA1 arabinose kinase (.1) Potri.018G003100
[exp]
19.36 0.7089
AT5G52990 SNARE-like superfamily protein... Potri.012G016400
[exp]
19.49 0.7348
AT1G54070 Dormancy/auxin associated fami... Potri.003G070500
[exp]
24.71 0.6807
AT4G27450 Aluminium induced protein with... Potri.011G122100
[exp]
26.66 0.6588
AT5G24890 unknown protein Potri.018G008200
[exp]
32.00 0.6935
AT5G21170 AKINBETA1 5'-AMP-activated protein kinas... Potri.001G220800
[exp]
32.63 0.7197
AT3G07350 Protein of unknown function (D... Potri.004G184700
[exp]
32.86 0.7092

Potri.006G219800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.