Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05830 525 / 0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4) AT3G07300 60 / 8e-10 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) AT1G72340 54 / 1e-07 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT1G53900 52 / 3e-07 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53880 52 / 3e-07 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT2G44070 50 / 1e-06 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT5G38640 50 / 2e-06 NagB/RpiA/CoA transferase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G026100 [exp] 61 / 4e-10 AT3G07300 632 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.T126106 [exp] 61 / 5e-10 AT3G07300 595 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.003G199301 [exp] 61 / 5e-10 AT3G07300 595 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.001G163300 [exp] 61 / 7e-10 AT1G53900 589 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Potri.003G072100 [exp] 58 / 4e-09 AT1G53900 587 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Potri.017G111800 [exp] 51 / 9e-07 AT5G38640 775 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.010G068600 [exp] 50 / 1e-06 AT3G07300 482 / 3e-170 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.004G103700 [exp] 47 / 2e-05 AT5G38640 792 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008417 [exp] 562 / 0 AT2G05830 543 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4) Lus10001970 [exp] 560 / 0 AT2G05830 538 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4) Lus10002762 [exp] 60 / 1e-09 AT3G07300 624 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Lus10037451 [exp] 59 / 1e-09 AT1G53900 479 / 6e-172 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Lus10003938 [exp] 59 / 3e-09 AT1G53900 597 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Lus10016349 [exp] 58 / 4e-09 AT3G07300 624 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [poplar] [flax] ISOCOT_Fold PF01008 [poplar] [flax] IF-2B Initiation factor 2 subunit family
Representative CDS sequence Show only first row Show all	>Potri.006G219900.2 pacid=42769994 polypeptide=Potri.006G219900.2.p locus=Potri.006G219900 ID=Potri.006G219900.2.v4.1 annot-version=v4.1 ATGGCTACAAATCCCAGCAATGGACTTGAAGGTGACAACACTCTCCAGTCTATCTGCTACCACCGTGGTTCACTTAAGCTTCTTGATCAAAGAAAGCTTC CTCTGGAGACTACTTACTTAGATATCAAAGATGCTTCTGATGGATGGCTGGCCATACGGGAGATGGTAGTTCGAGGGGCGCCTGCAATTGCTATTTCAGC AGCACTTTCTCTTGCCGTCGAAGTTTCTAATTTGGAGAATTTTAATGGGACACCTGTTGAAGCTGCTTCTTTCCTTGCAGGGAAACTGGATTATCTTGTT TCAAGCCGACCAACTGCAGTCAATCTCTCAGATGCTGCAACGAAACTTAAAGAAGTCGTATCAAAGGCTGCTGCTGCTGCTTCCAACTGTCAGAGTGTTT TTCAGGCTTACATAGAGGCAGCTGAAATTATGCTAGCAGATGATGTTGCTTCAAACAAAGCAATTGGCTCATATGGAGCAAGGTTTATTCAGAACCAACA GAAAGATCCTACAAAACTGTCTGTTTTGACCCATTGCAACACTGGCAGTCTTGCAACGGCTGGATATGGTACTGCCTTGGGTGTGATTCGTGCACTTCAC GGTGAAGGAGTGCTCCAGAGGGCCTATTGCACAGAAACTCGTCCGTTCAATCAGGGATCTAGACTCACAGCTTTCGAATTGGTACATGAGAAAATACCTG CCACCCTTATAGCAGACTCTGCTGCAGCTGCATTAATGAAAGACAGTAAAGTGAGTGCTGTTGTTGTTGGAGCAGATCGTGTGGCTGCAAATGGAGACAC AGCTAACAAGATTGGAACCTACAGCCTTGCCTTATGTGCAATGCATCATAACATTCCATTTTATGTTGCTGCACCACTTACCTCCTTTGATTCATCCCTT TCTTCTGGAAAAGAGATCATTATAGAGGAAAGATCTCCTAAGGAAATGTTGAACGCACGTGGAGGACTTGGGGAACAAGTTGCTGCATCCGGAATTTCAG TATGGAATCCAGCTTTTGATGTTACCCCTGCCAGCTTGATAAGTGGTATCATAACAGAAAAGGGTGTCATCACAAAGACGGGCATGGATGATTTTGACAT AAAGGATTTCATAAATAAGGCTGGATGA
AA sequence Show only first row Show all	>Potri.006G219900.2 pacid=42769994 polypeptide=Potri.006G219900.2.p locus=Potri.006G219900 ID=Potri.006G219900.2.v4.1 annot-version=v4.1 MATNPSNGLEGDNTLQSICYHRGSLKLLDQRKLPLETTYLDIKDASDGWLAIREMVVRGAPAIAISAALSLAVEVSNLENFNGTPVEAASFLAGKLDYLV SSRPTAVNLSDAATKLKEVVSKAAAAASNCQSVFQAYIEAAEIMLADDVASNKAIGSYGARFIQNQQKDPTKLSVLTHCNTGSLATAGYGTALGVIRALH GEGVLQRAYCTETRPFNQGSRLTAFELVHEKIPATLIADSAAAALMKDSKVSAVVVGADRVAANGDTANKIGTYSLALCAMHHNIPFYVAAPLTSFDSSL SSGKEIIIEERSPKEMLNARGGLGEQVAASGISVWNPAFDVTPASLISGIITEKGVITKTGMDDFDIKDFINKAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G05830			NagB/RpiA/CoA transferase-like...		Potri.006G219900 [exp]	0	1
AT3G17880		ATHIP2, ATTDX	HSC-70 INTERACTING PROTEIN, AR...		Potri.015G036000 [exp]	4.24	0.7666	ATTDX.2
AT3G05700			Drought-responsive family prot...		Potri.005G020900 [exp]	7.54	0.7322
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Potri.011G031000 [exp]	9.16	0.7527
AT5G10860		CBSX3	CBS domain containing protein ...		Potri.013G161500 [exp]	9.79	0.6814
AT2G02400			NAD(P)-binding Rossmann-fold s...		Potri.004G230900 [exp]	11.22	0.7124
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.014G179000 [exp]	16.43	0.7157	CHY1.1
AT3G14130			Aldolase-type TIM barrel famil...		Potri.003G069600 [exp]	16.49	0.7109
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.006G060200 [exp]	16.58	0.6971
					Potri.015G025700 [exp]	17.88	0.7193
AT1G02680		TAF13	TBP-associated factor 13 (.1)		Potri.014G122500 [exp]	24.08	0.6985

Compare expression of checked genes

Potri.006G219900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.