Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33200 2353 / 0 XI-15, ATXI-I, XI-I MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) AT5G20490 1664 / 0 XI-17, ATXIK, XIK MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) AT1G54560 1663 / 0 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT1G08730 1616 / 0 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT1G17580 1614 / 0 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT1G04160 1567 / 0 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT2G31900 1557 / 0 ATMYO5, PCR11, ATXIF, XIF MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) AT5G43900 1547 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT4G28710 1514 / 0 ATXIH, XIH MYOSIN XI H, Myosin family protein with Dil domain (.1) AT2G20290 1362 / 0 ATXIG, XIG MYOSIN XI G, myosin-like protein XIG (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G043900 [exp] 1704 / 0 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.001G199200 [exp] 1702 / 0 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.019G013800 [exp] 1694 / 0 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.006G145700 [exp] 1694 / 0 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.002G254300 [exp] 1627 / 0 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.001G233100 [exp] 1620 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.009G025300 [exp] 1603 / 0 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.008G174500 [exp] 1541 / 0 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Potri.002G041800 [exp] 1051 / 0 AT1G08730 1447 / 0.0 MYOSIN XI C, Myosin family protein with Dil domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009791 [exp] 2377 / 0 AT1G04160 2103 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Lus10038072 [exp] 2326 / 0 AT4G33200 1982 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Lus10005521 [exp] 1704 / 0 AT1G54560 2686 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10003315 [exp] 1672 / 0 AT5G20490 2479 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10021570 [exp] 1647 / 0 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10022850 [exp] 1619 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10017160 [exp] 1586 / 0 AT5G20490 2476 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10023696 [exp] 1430 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10032597 [exp] 1333 / 0 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10014753 [exp] 989 / 0 AT3G58160 1289 / 0.0 MYOSIN XI-16, MYOSIN A3, MYOSIN XI J, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00063 [poplar] [flax] Myosin_head Myosin head (motor domain) CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF01843 [poplar] [flax] DIL DIL domain
Representative CDS sequence Show only first row Show all	>Potri.006G220000.2 pacid=42767924 polypeptide=Potri.006G220000.2.p locus=Potri.006G220000 ID=Potri.006G220000.2.v4.1 annot-version=v4.1 ATGCCAGAGCCCAAGATGAATCTGCGGAAAGGCTCAAAAGTATGGGCCGAAGACAAGAATTTGGCATGGGTTGCTGCTGAAGTAACGGATTTCTTGGCCA AAAAAGTGCAAATCCTTACTGTTACTGGAAAACAGGTTTTGACTGTGCCTGAGAAATTGTGTCCGAGAGATGCAGATGAAGAGGAGGAGCATGGAGGTGT TGATGATATGACTAAATTGACTTACTTGAATGAGCCTGGAGTGCTTTATAATCTTCAAAGAAGATATGCTCTTAATGATATTTATACGTACACGGGAAGC ATTTTAATAGCGGTTAATCCATTCACCAAGCTTCCTCATCTGTACAACGTGCATATGATGGAGCAATATAAGGGAGCTCCATTTGGTGAGCTAAGTCCCC ATGTTTTTGCTGTGGCAGATGCATCATACAGAGCTATGATGAGTGAAGGTCGAAGCCAATCTATACTGGTTAGTGGAGAAAGTGGGGCTGGGAAAACTGA GACAACAAAATTGATTATGCAATATCTCACTTTTGTTGGTGGCCGAGCTGCTGGTGACGACAGAACAGTTGAGCAGCAAGTCCTTGAATCAAATCCACTC TTGGAGGCATTTGGTAATGCAAGGACTGTTAGAAATGACAACTCAAGTCGCTTTGGCAAGTTCGTCGAGATCCAGTTTGATGCAACTGGCAGGATATCCG GTGCTGCGATTAGAACTTACCTTCTGGAACGATCTCGTGTAGTTCAAATAACAGATCCCGAAAGGAATTATCACTGTTTTTATCAATTGTGTGCATCTGA GAGGGATGCAGAGAAGTACAAACTGGATAACCCGCATCACTTCCATTACTTAAATCAAAGTAAGACATATGAATTAGATGGGGTGAGCAACGCAGAAGAA TACATAAAGACAAGGAGGGCAATGGATATTGTTGGTATAAGCAATGAAGATCAGGAAGCTATATTTCGCATCTTGGCTGCAATTTTGCATCTTGGGAATA TTGAATTTTCTCCTGGCAAGGAACATGATTCTTCCACTGTAAAGGATGAAAAATCTAGCTTTCACATGCAAATGGCGGCTGATCTTTTTATGTGTGATGC AAACCTCTTGTTTGCAACATTGTGTACTCGTACAATTCAAACCCGTGAAGGAAATATTATAAAAGCTCTTGACTGTAATGCTGCTGTTGCTAGTCGAGAT GCCCTGGCAAAGACTGTTTATGCTAGGCTGTTTGATTGGCTTGTTGAGAAGATTAATAGGTCTGTCGGGCAGGATCCAACTTCCCTGATACAAGTTGGAG TATTGGACATTTATGGCTTTGAATGCTTCAAATATAATAGTTTTGAGCAGTTTTGCATTAACTTTGCAAATGAAAAACTTCAGCAACATTTCAATGAGCA TGTGTTCAAGATGGAGCAGGAGGAATATAGAAAAGAAGAAATTAATTGGAGCTACATTGAATTTATTGACAATCAGGATGTTCTGGATTTAATTGAAAAG AAACCTATTGGAATAATTGCTCTTTTGGATGAAGCTTGCATGTTCCCAAAATCAACACATGAAACTTTTTCAACCAAGCTATTTCAGAATTTCCGGGCCC ACCCAAGGCTGGAAAAGGCAAAATTTTCAGAAACGGATTTTACCGTTTCACATTATGCTGGCAAGGTTACTTATCAAACAGACACCTTTTTAGATAAAAA TCGTGATTATGTTGTTGTAGAACATTGCAATCTCATGTTGTCTTCGAAATGTCACTTTGTTGCTGGTCTTTTCCCTTTGCCTCCTGAGGAATCTTCAAGA TCTTCTTACAAGTTTTCATCTGTGGCCTCAAGATTTAAGCAACAACTTCAGGCTCTTATGGAGACCCTTAATTCAACAGAGCCTCATTATATACGTTGTG TGAAGCCGAACTCTATGAACCGACCTCAGAAATTTGAGAATTTGAGCATCCTACATCAACTTCGCTGTGGGGGTGTGCTGGAAGCTGTTCGGATAAGTCT CGCAGGTTATCCCACTCGAAGAAGCTACACAGAGTTTGTGGATCGGTTTGGACTATTAGCTCCTGAATTTGATGGAAGTTGCAGTTATGATGAAAAAACT TGGACAAAGAAAATTCTGCACAAGTTAAAGCTCGACAATTTTCAGCTAGGTAGGACCAAAGTGTTTCTCAGGGCTGGTCAGATTGGCATTTTAGACCTGC GGCGGGCTGAGGTTCTGGATGGTGCTGCAAAGCGTATTCAGCGTCAATTGCACACATTTATTGCACGCCGAGATTTTTTCTCAACACGTGCTGCTGCGTT TGCAATTCAATCATATTGCAGAGGATGCCTTGCTCGAAAAATGTTTGCTGCAAAACGAGAGAGAGCAGCTGCCATTTCCATACAGAAGTATGTCCGCAAG TGGCTATTAAGGCGTGCTTATTTGAAACTGCTCTCAGCTGCTATTTTCATGCAGTCAAACATACACGGTTTCCTGACTCGCAAAAGATTTCTGCAAGAAA AGAAGCAGAGAGCTGCCACCCTAATTCAGGCTCGTTGGAAGATTTACAAGTTCCGCTCAGCTTTGCGACATCGCCAGGCTTCTATCATAGCAATACAGTG TCGTTGGAGGCAAAAGCTGGCAAAAAGAGAGCTCCGAAGGCTTAGACAAGAGGCTAATGAAGCGGGTGCGTTGCGTTTAGCTAAGACTAAACTTGAGAAG CAGTTAGAAGATCTCACATGGCGATTGCATCTAGAAAAAAGATTGCGGGTATCAAATGACGAGGCTAAATCAGTTGAAATTTCCAAGCTTCGAAATACTG TGTCATCTATGAGCCTTGAGTTAGATGCAGCTAAGTTTGCTACTATCAATGAATGCAACAAAAATGCAGTATTGCTAAAACAATTAGAATTGACAGTGAA TGAAAAATCAGCTTTGGAAAGAGAACTCGTAGTGATGGCTGAACTGAGAAAAGAAAATGCTTTACTAAAGAGTTCTTTGGATGCCTTGGAAAAGAAAAAC TCTGCTATTGAGCTTGAGCTTATTGAAGCTCAAACGAATGGTAACGATACCACTGTGAAGTTGCAGGAAATTGAAGAGAAATGTTCTCAGTTTCAACAAA CTGTTCGAAGTCTTGAGGAGAAGCTTTCTCATTTGGAAGATGAGAATCATGTCCTTCGACAAAAAGCTTTGACCCCATCCTCGAAGAGCAATCGCCCTGG TTTTGTGAGGGCATTTTCTGAAAAATACTCTAGTGCGCTAGCTCTTGCCCACTCTGAGCGGAAGTCTGCATTTGAATCTCCTACACCATCAAAACTTATT GTGCCTTCCATGCATGGTTTGTCAGAATCACGTCGATCGAAGTTTACAGCTGAACGTCACCAGGAGAACTATGAATTCCTCTCAAAATGCATCAAAGAAG ATTTGGGTTTTATTGATGGCAAACCACTAGCAGCTTGTATCATATACAGATGTCTTCTTCACTGGCATGCCTTTGAATCTGAGCGCACAGCCATTTTTGA CTACATTATTGAAGGAATAAATGAAGTTCTGAAGGTTGGGGATGAGAACATTACGTTACCATATTGGCTGTCAAATGCCTCAGCACTACTTTGCCTTCTC CAGAGGAACTTAAGGTCAAATGGCTTTTTGACTGCAGCTGTTCCATCTTCTACATCTTCTGGATTATCAGGGAGGGTCATTCATGGTCTTAAATCTCCTT TCAAAATCATGGGATATGAGGATGGTCTGTCACATGTGGAAGCAAGATATCCAGCAATACTATTTAAACAACAACTAACTGCATGTGTGGAGAAGATTTT TGGCTTGATTAGAGACAACTTGAAGAAAGAATTATCACCACTGCTGGGTTTATGTATTCAGGCACCCAAATCTGCACGGCATGCTGGGAAATCATCAAGA TCACCCGGTGGCATTCCTCAGCAAGCAGCTAGTAGCCAATGGGAGAGCATTATTAAATTTTTGGATTCTCTCATGGACTGTTTACGTGAGAATCATGTAC CATCTTTCTTCATCCGTAAGCTCATCACCCAGGTTTTCTCTTTTGTCAATATATCCCTTTTTAACAGCCTTCTACTACGACGTGAATGTTGCTCGTTTTC AAATGGGGAGTATGTGAAATCTGGTCTAGCAGAACTGGAGAAATGGATAGTGGTTGCAACGGAGGAGTATGCAGGAACATCTTGGCATGAGCTAAATTAT ATTAGACAAGCTGTTGGGTTTCTGGTAATTCATCAGAAGAGAAAAAAGTCTCTTCAAGAAATCATGCAAGATCTGTGTCCAGCATTGACCGTTCGCCAAA TCTATCGTATAAGTACCATGTACTGGGATGATAAATATGGCACTCAGAGTGTGTCAAATGAGGTGGTTGCCCAAATGAGAGAGATGTTGAACAAGGACAA TCAGAATATGACCTCAAACTCTTTCTTGTTGGATGATGACCTCAGCATTCCATTCTCTACTGAGGATATAGACATGGCAATTCCTGTAATAGATCCTTCC AGCGTTGAACTCCCAAAGTTGTTGACAGAACATCCTTGTGCTCAGTTTCTGGTCCTATGTCAAACGTAA
AA sequence Show only first row Show all	>Potri.006G220000.2 pacid=42767924 polypeptide=Potri.006G220000.2.p locus=Potri.006G220000 ID=Potri.006G220000.2.v4.1 annot-version=v4.1 MPEPKMNLRKGSKVWAEDKNLAWVAAEVTDFLAKKVQILTVTGKQVLTVPEKLCPRDADEEEEHGGVDDMTKLTYLNEPGVLYNLQRRYALNDIYTYTGS ILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRAMMSEGRSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRTVEQQVLESNPL LEAFGNARTVRNDNSSRFGKFVEIQFDATGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASERDAEKYKLDNPHHFHYLNQSKTYELDGVSNAEE YIKTRRAMDIVGISNEDQEAIFRILAAILHLGNIEFSPGKEHDSSTVKDEKSSFHMQMAADLFMCDANLLFATLCTRTIQTREGNIIKALDCNAAVASRD ALAKTVYARLFDWLVEKINRSVGQDPTSLIQVGVLDIYGFECFKYNSFEQFCINFANEKLQQHFNEHVFKMEQEEYRKEEINWSYIEFIDNQDVLDLIEK KPIGIIALLDEACMFPKSTHETFSTKLFQNFRAHPRLEKAKFSETDFTVSHYAGKVTYQTDTFLDKNRDYVVVEHCNLMLSSKCHFVAGLFPLPPEESSR SSYKFSSVASRFKQQLQALMETLNSTEPHYIRCVKPNSMNRPQKFENLSILHQLRCGGVLEAVRISLAGYPTRRSYTEFVDRFGLLAPEFDGSCSYDEKT WTKKILHKLKLDNFQLGRTKVFLRAGQIGILDLRRAEVLDGAAKRIQRQLHTFIARRDFFSTRAAAFAIQSYCRGCLARKMFAAKRERAAAISIQKYVRK WLLRRAYLKLLSAAIFMQSNIHGFLTRKRFLQEKKQRAATLIQARWKIYKFRSALRHRQASIIAIQCRWRQKLAKRELRRLRQEANEAGALRLAKTKLEK QLEDLTWRLHLEKRLRVSNDEAKSVEISKLRNTVSSMSLELDAAKFATINECNKNAVLLKQLELTVNEKSALERELVVMAELRKENALLKSSLDALEKKN SAIELELIEAQTNGNDTTVKLQEIEEKCSQFQQTVRSLEEKLSHLEDENHVLRQKALTPSSKSNRPGFVRAFSEKYSSALALAHSERKSAFESPTPSKLI VPSMHGLSESRRSKFTAERHQENYEFLSKCIKEDLGFIDGKPLAACIIYRCLLHWHAFESERTAIFDYIIEGINEVLKVGDENITLPYWLSNASALLCLL QRNLRSNGFLTAAVPSSTSSGLSGRVIHGLKSPFKIMGYEDGLSHVEARYPAILFKQQLTACVEKIFGLIRDNLKKELSPLLGLCIQAPKSARHAGKSSR SPGGIPQQAASSQWESIIKFLDSLMDCLRENHVPSFFIRKLITQVFSFVNISLFNSLLLRRECCSFSNGEYVKSGLAELEKWIVVATEEYAGTSWHELNY IRQAVGFLVIHQKRKKSLQEIMQDLCPALTVRQIYRISTMYWDDKYGTQSVSNEVVAQMREMLNKDNQNMTSNSFLLDDDLSIPFSTEDIDMAIPVIDPS SVELPKLLTEHPCAQFLVLCQT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33200		XI-15, ATXI-I, ...	MYOSIN XI-15, MYOSIN XI I, myo...		Potri.006G220000 [exp]	0	1
AT5G07400	FHA		forkhead-associated domain-con...		Potri.012G111800 [exp]	1.73	0.9004
AT3G17450			hAT dimerisation domain-contai...		Potri.014G114100 [exp]	4.24	0.8763
AT4G32820			Tetratricopeptide repeat (TPR)...		Potri.018G057900 [exp]	5.47	0.8789
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.001G157300 [exp]	6.63	0.8865
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.003G077600 [exp]	7.93	0.8864
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.010G154000 [exp]	8.06	0.8637	Pt-SPL1.4
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.004G141700 [exp]	10.95	0.8670
AT1G22860			Vacuolar sorting protein 39 (....		Potri.001G081900 [exp]	11.53	0.8750
AT1G45160			Protein kinase superfamily pro...		Potri.002G263000 [exp]	12.36	0.8689
AT1G24300			GYF domain-containing protein ...		Potri.001G326500 [exp]	13.56	0.8729

Compare expression of checked genes

Potri.006G220000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.