Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26330 1547 / 0 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G62230 1185 / 0 ERL1 ERECTA-like 1 (.1.2) AT5G07180 1171 / 0 ERL2 ERECTA-like 2 (.1) AT5G65700 504 / 6e-163 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 498 / 2e-160 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 489 / 1e-155 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 485 / 2e-154 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 476 / 3e-152 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 466 / 4e-146 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 456 / 3e-142 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G130400 [exp] 1209 / 0 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2) Potri.015G132200 [exp] 1203 / 0 AT5G62230 1404 / 0.0 ERECTA-like 1 (.1.2) Potri.007G009200 [exp] 504 / 2e-162 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G073600 [exp] 498 / 2e-160 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G157300 [exp] 490 / 1e-157 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 486 / 8e-156 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.013G051300 [exp] 483 / 9e-154 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G223900 [exp] 474 / 2e-151 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.011G139700 [exp] 470 / 7e-149 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038071 [exp] 1522 / 0 AT2G26330 1554 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Lus10009790 [exp] 1497 / 0 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Lus10031689 [exp] 1166 / 0 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10031108 [exp] 1147 / 0 AT5G62230 1422 / 0.0 ERECTA-like 1 (.1.2) Lus10039641 [exp] 494 / 3e-158 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 491 / 2e-157 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10000814 [exp] 474 / 2e-151 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027951 [exp] 467 / 2e-148 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011761 [exp] 463 / 2e-147 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037358 [exp] 463 / 5e-147 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G220100.1 pacid=42769313 polypeptide=Potri.006G220100.1.p locus=Potri.006G220100 ID=Potri.006G220100.1.v4.1 annot-version=v4.1 ATGGCATTTCGTTTGGAACTTGTCCTTTTTGCTCTTCTTCTCTCTTTGGTTGTTGATTCTGTGCATTCTGATGATGGAGCTACGTTATTGGAGATAAAGA AATCATTCAGGGATGTGGATAATGTTCTGTATGACTGGACAGACTCCCCATCTTCTGATTATTGTGTTTGGAGAGGGGTCATCTGCGATAATGTCACCTA CAATGTCATTGCACTTAATCTATCAGGTTTGAATCTTGAAGGGGAGATATCACCTGCAATTGGAAATCTCAAAGACCTGACCTCCATTGATCTCAAAGGA AATCGTCTCTCTGGCCAGATACCTGATGAGATGGGTGACTGCTCTTCTTTACAAGACTTGGACCTCTCGTTTAATGAGATAAATGGAGATATACCATTTT CAATTTCCAAGTTGAAGCAACTTGAATTACTAGTCTTGAAAAATAATCAATTGATCGGACCAATTCCATTGACTCTGTCACAGATTCCAAACTTAAAAGT TTTAGACCTGGCGCAGAACAGACTCAGTGGGGAAATACCAAGACTTCTTTACTGGAACGAAGTTTTGCAGTATCTTGGCTTGCGAGGAAATAATTTGGTG GGTGCTCTCTCTCCTGATATGTGCCAGTTAACGGGGCTGTGGTTCTTTGATGTAAAAAACAACAGTTTGACCGGCAAAATTCCTGAGAATATAGGCAACT GTACTTCCTTTCAGGTCTTGGACTTGTCCTTCAACCAGCTAACAGGAGAGATTCCATTCAACATTGGATTTTTGCAGATAGCTACATTATCATTGCAAGG AAATCAACTGACGGGGAAGATTCCACCAGTGATTGGTCTGATGCAGGCACTTGCTGTATTAGATTTAAGCTGCAACATGCTAAGTGGACCAATTCCTCCT ATATTGGGAAATTTAACGTACACAGAGAAATTGTATTTGCATGGTAACCAGCTGACTGGATCCATCCCCCCTGAGCTTGGGAATATGACAAAGCTTCATT ACCTGGAATTGAATGATAATCAACTCATAGGGAACATCCCACCAGAGCTTGGAAAGCTCACTGATTTATATGATCTAAATGTCGCCAACAACCACCTTGA AGGGCCTATTCCTGATAATCTTAGCTCATGCACAAATCTCAATAGCCTCAATGTGCATGGAAACAATTTGAATGGAACCATTCCACGTGCTCTGCGAAGG CTCGAGAGTATGACAAACCTAAATCTCTCTAGCAACAATATTCAAGGTCCTATTCCTATTGAATTATCTCGAATTAGTAATCTGGATACTTTGGACATTT CCAATAACAAAATTAGTGGATCCATTCCTTCTTCCCTTGGTTACTTGGAGCATCTTCTGAAGCTTAATCTTAGTAGAAATCAACTAACAGGTTTTATTCC AGCTGAGTTCGGAAACCTGAGAAGTGTCATGGAGATAGACCTTTCAGATAATCATCTCTCAGGATTGATTCCACAGGAATTAAGTCAAATTCAAAACATG TTTTTATTGAGGCTGGAAAACAATAATCTCTCCGGCGATGTAATATCTCTAATCAACTGCCTCAGTTTAAGTGTCTTAAATGTATCCTATAACAACCTAG CTGGTGTTATTCCTACAAGCAACAACTTTTCAAGGTTTTCACCTGACAGTTTCATTGGAAACCCGGGTCTTTGTGGCTATTGGCTCAACTCTCCATGCCA TGATTCCCATCCAGCAGAGCGAGCCACAATTTCTAAAGCAGCAATACTGGGGATTGCTTTGGGTGCCCTTGTAATTCTTCTCATGATCTTAGTAGCAGCA TGTCGGCCACATAATCCAGCACCTTTCCCAGATGGATCACTTGACAAACCAGTTAGTTATTCAACACCAAAGTTGGTGATCCTTCACATGAATATGGCAC TCCATGTGTACGAGGATATTATGAGGATGACTGAGAATTTGAGTGAGAAGTACATAATTGGTCATGGTGCATCAAGCACTGTTTACAAATGCGTCCTGAA AAATTGCAGGCCAGTGGCTATTAAGAGGCTCTATTCACATTATCCCCAATGCTTGAAGGAATTTGAGACAGAATTGGAGACAGTAGGGAGCATCAAGCAT CGGAATCTGGTCAGCCTTCAAGGATATTCCCTGTCACCTTCCGGGAACCTTCTTTTCTATGATTATATGGAAAATGGCAGTCTATGGGATCATTTTCATG GCCCCATGAAGAAGAAAAAGCTTGACTGGGATACTCGCCTCCGGATAGCACTTGGAGCAGCTCAAGGGCTAGCATATCTACACCATGATTGTAGTCCTCG CATCATTCACAGGGATGTGAAGTCATCAAACATTCTACTGGACAAAGATTTCGAGCCCCATCTCACTGATTTTGGGATTGCTAAGCGCTTATGCGTGTCA AAATCCCATACTTCTACCTACATAATGGGAACGATTGGCTATATAGACCCTGAGTATGCCCGCACTTCACGTCTCACTGAAAAGTCTGATGTGTACAGTT ATGGGATTGTTCTACTTGAGTTGCTAACTGGAAGGAAAGCAGTTGACAATGAATGCAATCTTCATCATCTGATTCTGTCCAAGACAGCTAACAATGAGGT CATGGAAACTGTTGATCCTGAGATCACTGCCACATGTAAAGATCTTGGAGCAGTAAAGAAGGTTTTTCAACTTGCCCTCCTATGCACCAAGAGACAGCCA ACAGATCGGCCGACTATGCACGAAGTGACACGCGTCCTGGGGAGCCTTGTGCCACTCATCACACCACCCAAACAATGCACCCAAGCTCCACCTGCCCCAC TCCCATCTGCGAAAGTCCCATGCTATATCGATGAGTATGCGAATATCAAGTCTCCACACATTTTGAATTGTCCCTCCATGAGCACTTCAGATGCCCAACT CTTCCTAAAGTTTGGTGAGGTAATATCCCAGAACAGTCAATGA
AA sequence Show only first row Show all	>Potri.006G220100.1 pacid=42769313 polypeptide=Potri.006G220100.1.p locus=Potri.006G220100 ID=Potri.006G220100.1.v4.1 annot-version=v4.1 MAFRLELVLFALLLSLVVDSVHSDDGATLLEIKKSFRDVDNVLYDWTDSPSSDYCVWRGVICDNVTYNVIALNLSGLNLEGEISPAIGNLKDLTSIDLKG NRLSGQIPDEMGDCSSLQDLDLSFNEINGDIPFSISKLKQLELLVLKNNQLIGPIPLTLSQIPNLKVLDLAQNRLSGEIPRLLYWNEVLQYLGLRGNNLV GALSPDMCQLTGLWFFDVKNNSLTGKIPENIGNCTSFQVLDLSFNQLTGEIPFNIGFLQIATLSLQGNQLTGKIPPVIGLMQALAVLDLSCNMLSGPIPP ILGNLTYTEKLYLHGNQLTGSIPPELGNMTKLHYLELNDNQLIGNIPPELGKLTDLYDLNVANNHLEGPIPDNLSSCTNLNSLNVHGNNLNGTIPRALRR LESMTNLNLSSNNIQGPIPIELSRISNLDTLDISNNKISGSIPSSLGYLEHLLKLNLSRNQLTGFIPAEFGNLRSVMEIDLSDNHLSGLIPQELSQIQNM FLLRLENNNLSGDVISLINCLSLSVLNVSYNNLAGVIPTSNNFSRFSPDSFIGNPGLCGYWLNSPCHDSHPAERATISKAAILGIALGALVILLMILVAA CRPHNPAPFPDGSLDKPVSYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGHGASSTVYKCVLKNCRPVAIKRLYSHYPQCLKEFETELETVGSIKH RNLVSLQGYSLSPSGNLLFYDYMENGSLWDHFHGPMKKKKLDWDTRLRIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEPHLTDFGIAKRLCVS KSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNECNLHHLILSKTANNEVMETVDPEITATCKDLGAVKKVFQLALLCTKRQP TDRPTMHEVTRVLGSLVPLITPPKQCTQAPPAPLPSAKVPCYIDEYANIKSPHILNCPSMSTSDAQLFLKFGEVISQNSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Potri.006G220100 [exp]	0	1
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.018G051400 [exp]	1.00	0.9716
AT5G12890			UDP-Glycosyltransferase superf...		Potri.017G077500 [exp]	2.82	0.9316
AT1G78170			unknown protein		Potri.002G096100 [exp]	2.82	0.9414
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.017G063966 [exp]	4.47	0.9400
AT5G04370		NAMT1	S-adenosyl-L-methionine-depend...		Potri.019G022200 [exp]	5.47	0.9458
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Potri.007G043100 [exp]	5.47	0.9066
AT3G05140		RBK2	ROP binding protein kinases 2 ...		Potri.013G028100 [exp]	7.87	0.9044
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Potri.019G076600 [exp]	8.94	0.8649
AT3G30300			O-fucosyltransferase family pr...		Potri.004G113200 [exp]	9.79	0.8467
AT1G48405			Kinase interacting (KIP1-like)...		Potri.015G030100 [exp]	10.39	0.9344

Compare expression of checked genes

Potri.006G220100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.