Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21920 221 / 2e-72 ATYLMG2 YGGT family protein (.1.2) AT3G07430 81 / 3e-18 ATYLMG1-1, EMB1990 embryo defective 1990, YGGT family protein (.1) AT4G27990 80 / 5e-18 ATYLMG1-2 YGGT family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G250200 [exp] 81 / 4e-18 AT4G27990 210 / 2e-68 YGGT family protein (.1) Potri.002G062100 [exp] 43 / 6e-05 AT5G36120 184 / 2e-59 "cofactor assembly, complex C \(B6F\)", cofactor assembly, complex C (B6F) (.1) Potri.005G199000 [exp] 41 / 0.0004 AT5G36120 181 / 4e-58 "cofactor assembly, complex C \(B6F\)", cofactor assembly, complex C (B6F) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008993 [exp] 207 / 6e-67 AT5G21920 186 / 1e-58 YGGT family protein (.1.2) Lus10009622 [exp] 205 / 3e-66 AT5G21920 181 / 7e-57 YGGT family protein (.1.2) Lus10009586 [exp] 77 / 6e-17 AT4G27990 204 / 2e-66 YGGT family protein (.1) Lus10020405 [exp] 77 / 6e-17 AT4G27990 199 / 1e-64 YGGT family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02325 [poplar] [flax] YGGT YGGT family
Representative CDS sequence Show only first row Show all	>Potri.006G220400.1 pacid=42769113 polypeptide=Potri.006G220400.1.p locus=Potri.006G220400 ID=Potri.006G220400.1.v4.1 annot-version=v4.1 ATGGCTCCTTTGAACGAGAATTGTTTAGAGAAAACAAATTCAAAATGCCAAGCACCAATTTTTGCTCCAAACTCCATGGTGTTACTCTCTTCTTCAATCC TTCAAAACCCATTATTTCTCAGACCCCCAATCAAGCAAAATCCAAGTATTTTCATGGGTGAGCTTCATAATTCAATCACTTCAGCAGCTGACAAATGCTT GAGATTCCTCCATTCCTTTGCCTCTCGAAATCCTATTCTCAAAAACATTGTAACTGATTTTAACCAACATATGACCCGGATTCAATGCAGGAGGGAGTAC TGCAGGAGGAATATGAACAACTATCTGTCAAATCACAACTTTGCAGCTGTCTTACCTGGTGATTCAGTGGCAGGGCTAGTGGTGGCTAATGGGATCATTA ATTTCTTGAATATATACAACACTTTGTTGGTTGTAAGGCTTGTTTTGACCTGGTTTCCTAACTCTCCTCCTGCTATCGTTAGCCCCCTAAGCACTTTGTG TGACCCATACTTGAACATATTCCGCGGGATCATTCCACCACTAGGAGGGACACTGGATCTCTCTCCTATACTAGCATTCTTGGTTCTAAATGCCTTTACT AGCACTGCTACTGCACTTCCTGCTGAACTGCCAGAAAATGGAGCTTCTCCAAGAAGTCGCTCATCCCCTACATTGTTCACTCATCTCACTACAGCACAGA AGAAATGGATGAGAAGGCTCAATGGAAACAAGTCAAGGAGCTCCCCTGGTGCCGATTAG
AA sequence Show only first row Show all	>Potri.006G220400.1 pacid=42769113 polypeptide=Potri.006G220400.1.p locus=Potri.006G220400 ID=Potri.006G220400.1.v4.1 annot-version=v4.1 MAPLNENCLEKTNSKCQAPIFAPNSMVLLSSSILQNPLFLRPPIKQNPSIFMGELHNSITSAADKCLRFLHSFASRNPILKNIVTDFNQHMTRIQCRREY CRRNMNNYLSNHNFAAVLPGDSVAGLVVANGIINFLNIYNTLLVVRLVLTWFPNSPPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLVLNAFT STATALPAELPENGASPRSRSSPTLFTHLTTAQKKWMRRLNGNKSRSSPGAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G21920		ATYLMG2	YGGT family protein (.1.2)		Potri.006G220400 [exp]	0	1
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Potri.016G068300 [exp]	1.00	0.9872	CP33.2
AT3G29185			Domain of unknown function (DU...		Potri.004G120900 [exp]	2.44	0.9872
AT3G08740			elongation factor P (EF-P) fam...		Potri.016G136600 [exp]	4.89	0.9821
AT3G13120			Ribosomal protein S10p/S20e fa...		Potri.011G092800 [exp]	5.19	0.9859
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Potri.005G161000 [exp]	5.83	0.9768
AT1G14150		PnsL2, PQL2, PQ...	PsbQ-like 1, Photosynthetic ND...		Potri.010G166800 [exp]	6.00	0.9807
AT1G32220			NAD(P)-binding Rossmann-fold s...		Potri.001G136900 [exp]	6.63	0.9802
AT4G29060		EMB2726	embryo defective 2726, elongat...		Potri.018G083900 [exp]	8.36	0.9802
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.016G099400 [exp]	9.00	0.9731	IM30.2
AT3G09210		PTAC13	plastid transcriptionally acti...		Potri.006G094800 [exp]	9.16	0.9811

Compare expression of checked genes

Potri.006G220400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.