Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06040 425 / 4e-139 unknown protein AT5G21900 291 / 4e-90 RNI-like superfamily protein (.1) AT5G23340 80 / 8e-16 RNI-like superfamily protein (.1) AT3G58530 74 / 7e-14 RNI-like superfamily protein (.1) AT4G15475 67 / 2e-11 F-box/RNI-like superfamily protein (.1) AT2G25490 63 / 6e-10 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT1G21410 62 / 6e-10 SKP2A F-box/RNI-like superfamily protein (.1) AT1G77000 61 / 2e-09 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT4G30640 59 / 2e-09 RNI-like superfamily protein (.1) AT5G27920 61 / 3e-09 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G142200 [exp] 515 / 2e-172 AT2G06040 544 / 0.0 unknown protein Potri.006G068500 [exp] 82 / 5e-16 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 79 / 5e-15 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G088800 [exp] 77 / 1e-14 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.018G027700 [exp] 77 / 2e-14 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G195800 [exp] 76 / 2e-14 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.006G254100 [exp] 76 / 3e-14 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.013G013100 [exp] 63 / 4e-10 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.007G075600 [exp] 61 / 5e-10 AT5G23340 291 / 5e-97 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033320 [exp] 432 / 1e-141 AT2G06040 517 / 7e-174 unknown protein Lus10017169 [exp] 423 / 4e-139 AT2G06040 436 / 4e-143 unknown protein Lus10034779 [exp] 394 / 2e-127 AT2G06040 471 / 5e-156 unknown protein Lus10021558 [exp] 130 / 3e-32 AT2G06005 428 / 3e-149 FRIGIDA interacting protein 1 (.1.2) Lus10012764 [exp] 94 / 2e-19 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10040998 [exp] 81 / 6e-16 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10012294 [exp] 79 / 1e-15 AT3G58530 474 / 7e-169 RNI-like superfamily protein (.1) Lus10002913 [exp] 79 / 4e-15 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10013444 [exp] 78 / 5e-15 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10002014 [exp] 76 / 3e-14 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G220600.1 pacid=42767750 polypeptide=Potri.006G220600.1.p locus=Potri.006G220600 ID=Potri.006G220600.1.v4.1 annot-version=v4.1 ATGGATTCAGGGGAAAAAAAAGAGAAGGAAAAATGGGGTCTTGATTTAAATTTATCTACACAGGAGGAGTTTTCAACTGGTTTAGGGTTTCAAGATTTTT TAGGGGAAGAGAAAGAAGCTGAAAATGACCAACTGGGTCATGATTTTGGTAGAGATAGCGATTTTAGGATAAGGGAAAGAGACTCCGTTGTTGAAACGGA TGATTTTACTAGTAGTAAGAGATTGAGGTACACAACTGAAGAGAAGGGGAAGGCTAAAGTTGACTGTGAAGTGAATCTTGATTTTGATCTTAATCTTGAT TTGTGGGGATTTGAGAAAGACCCAGTTGAAGGGAAAATGGATACATGGCCATTTGAAGCAGGGTTATTGAGTTCAGGGCCTGTGATGCACAATTTCTTTC CTGATAGTGTAGAGAGAAATACCCAGGTGGAGAATTATGATGTTCCAAGAAAGGACATCGTTTTTGAACAAAGAAAGGAGATAGCTTTGTCAAGTGTAAG GAAGAGACAATCAAGAAGAAAGGAACAGAAGTTGATGCAGCGTGAAATTGCTAGGAATGTTGCTCCACGATTTGCACATTTAGGTCCTCAAGAGCAGCAG ATGAAGCAGCATAAAGAAAAGAAAGTTAAATTGAGAGAAGTTGATTTGGAAATGGAACTGGACTTGGATGATTCTCAAAGTCCATTTTCATTGGCACTGG AAGCAATCAAAATGCGGCAAACTGTTCGAAAAGGGTCATTAACTGGTTTCTCTGAGTCGCTCTTCAAATGGGTTCCTGCAAAAGCTAAAGATTGCGATGC TCTGAAACGCGATGTTCCTACACTTCTGGACCTCAGTTTGAATGCTCTTGCAAAAAACGCTGATGCTATTGTGTCACTTGAACATGTTCCAGATAAATTA CGGCATAGACTTAGTCAGTTGGTTAGTGATTGTGGAGTAGTGGATGCTCACTTTGTTGAACTTCTTGCAAGGGGCTCTCCAACCGAAATTCGTCTGAGGA ATATTTCGCGGTTGACAGAAGAGGAGTTTTCCAAAATATTTAGTGTTTGTGACACCAAGGACTTGACTGTGCTACAACTTGACCTTTGTGGACGATGCAT GCCTGATTATATATTAAATGGCACCTTAGCCAGGTCATCACATAGACTTCCTTCCTTAGCTACCATATCTTTGAAGGGTGCACATCGTTTGTCAGATATT GGACTAACTCAGTTGGCTGTGTCTGCACCTGCATTACAGTCTATAAATCTGAGCCAGTGCTCCCTTCTCACATCTCAAGGCATCAGTGATTTCGTTAGCT GTTTTGAATCTACTTTGAGGGAGCTGTATATAGATGATTGTCAGAATATAGATGCGACAATTATTTTACCTGCACTGAAGAAACTCAAGTGCCTAGAAGT GTTGTCAGTAGCAGGCATCGAGACTGTTTGTGACAATTTTGTCATTGGACTGGTCAAAGCACTTGGCATAAACATGAAAGAGCTTGGTTTCGCTAATTGC GTGCAACTGACTGATATATCACTTCGAATTGTAGGCAAAAATTGTCCCAACTTATGTGCTCTGGATCTTTCTTACTTGCATAACTTGACAGACTCTGCAT TAAAACACCTAGCCAATGGTTGCCAATCAATTAGGAGACTCAAACTTCACCGAAATGATTTCAGTGATGAAGCTATTTCTGCCTTCTTGGAAGTCTCTGG ACAGTCTCTGGATGCACTTTCAGTTAACAATATCCATAGGGTTGCTCACAACACTGCCTTATCAATTGCCAAATGTTCAAGAAATTTGGTGAGTTTGGAC TTATCATGGTGCCGCAGATTAACAGATGAGGCACTAGGAATGATTGTTGATAGCTGCTTATCACTGAAGCTGCTCAAGCTATTTGGATGCACGCAGATTA CAGAAGCATTTCTAAATGGCCACTCAAACCCCATGGTGCGAATCATTGGATGTAAAACTGGACCAGTGTTGGAGCATCTTGATGCGCTTGAACCTCAAGA AAATCCTTTGCGATATTCTCCACTGACAAGCTTTTGCTGA
AA sequence Show only first row Show all	>Potri.006G220600.1 pacid=42767750 polypeptide=Potri.006G220600.1.p locus=Potri.006G220600 ID=Potri.006G220600.1.v4.1 annot-version=v4.1 MDSGEKKEKEKWGLDLNLSTQEEFSTGLGFQDFLGEEKEAENDQLGHDFGRDSDFRIRERDSVVETDDFTSSKRLRYTTEEKGKAKVDCEVNLDFDLNLD LWGFEKDPVEGKMDTWPFEAGLLSSGPVMHNFFPDSVERNTQVENYDVPRKDIVFEQRKEIALSSVRKRQSRRKEQKLMQREIARNVAPRFAHLGPQEQQ MKQHKEKKVKLREVDLEMELDLDDSQSPFSLALEAIKMRQTVRKGSLTGFSESLFKWVPAKAKDCDALKRDVPTLLDLSLNALAKNADAIVSLEHVPDKL RHRLSQLVSDCGVVDAHFVELLARGSPTEIRLRNISRLTEEEFSKIFSVCDTKDLTVLQLDLCGRCMPDYILNGTLARSSHRLPSLATISLKGAHRLSDI GLTQLAVSAPALQSINLSQCSLLTSQGISDFVSCFESTLRELYIDDCQNIDATIILPALKKLKCLEVLSVAGIETVCDNFVIGLVKALGINMKELGFANC VQLTDISLRIVGKNCPNLCALDLSYLHNLTDSALKHLANGCQSIRRLKLHRNDFSDEAISAFLEVSGQSLDALSVNNIHRVAHNTALSIAKCSRNLVSLD LSWCRRLTDEALGMIVDSCLSLKLLKLFGCTQITEAFLNGHSNPMVRIIGCKTGPVLEHLDALEPQENPLRYSPLTSFC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G06040			unknown protein		Potri.006G220600 [exp]	0	1
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.012G106100 [exp]	1.00	0.8786	Pt-ARF2.2
AT3G13670			Protein kinase family protein ...		Potri.001G009700 [exp]	1.73	0.8369
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Potri.017G072100 [exp]	5.65	0.8362
AT3G49601			unknown protein		Potri.006G233000 [exp]	6.16	0.8429
AT1G78100		AUF1	auxin up-regulated f-box prote...		Potri.002G094600 [exp]	6.48	0.7945
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Potri.010G051600 [exp]	16.12	0.7788
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Potri.017G044600 [exp]	16.58	0.7854
AT3G60850			unknown protein		Potri.014G070200 [exp]	16.97	0.8187
AT3G49730			Tetratricopeptide repeat (TPR)...		Potri.002G176100 [exp]	17.32	0.7502
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Potri.008G182500 [exp]	17.74	0.7750

Compare expression of checked genes

Potri.006G220600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.