Plant FIBer expression Database

Potri.006G220800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26340 178 / 2e-55 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000477
[exp]
218 / 2e-70 AT2G26340 200 / 1e-63 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G220800.2 pacid=42767564 polypeptide=Potri.006G220800.2.p locus=Potri.006G220800 ID=Potri.006G220800.2.v4.1 annot-version=v4.1
ATGGCCACACTTAACACCACCTCCTCCTCCTTCCATTCCTCAGCTCTCCCATATCATTTTTCTCTTTCTTCTTCGAAACCAAACATTAGGTCGGGTGGTC
GAGGAGTAATCAGGTGCTGCGCATTGATGTCCTCCTCCACCACCTCAAAATGGCAGGGTCAGAGCAGGCGTTCATTGCTTTCCAACTCTCTACTTCTCTC
TCACTTCCTTTTTGTCCCTAATGATGCTATTGCTGGCAGTTTTTTCGATAATTATGTGAAACGGAAAAAGCTTGATCCACTAGAGGCTTATGTGCCTGCT
GTTATATTGACTGAGTTGCAGATTAAGGATTTAGAGAAAATTCTGGATGTTGATCAGCCCCAATTCGGCAACTATCGATCTTTATTACGTTCTGGCCCGG
CAGCATCTCTTCGTGTAAATATTCGAGCAGTAGCACAATATGCTTCAGATGCTGGAAATGGTAACGCTGCTTTCAACAATGTTGATCAATGTCTCAGTGC
TTTGGAAGAACTCGATTCCTTGCTTCTGCGTGCATCAAGAAATGAGCCAGATGCTTCAGTTAAATCGATGAAGGCAAAAGTAGGAATTGCCCTTGCTGCA
ATGGAAAGCCTTCTCCAGACTGTCCCATCTGATGTGTTAGATAAAGGGAAGGCTGTTGCGGATGCTTACCGGACCCCAGATGAAGACTCTGAAGCTGAAA
TCTTAGACCCAGAATTGAAGCAGTTGGAATCAATCTTATGA
AA sequence
>Potri.006G220800.2 pacid=42767564 polypeptide=Potri.006G220800.2.p locus=Potri.006G220800 ID=Potri.006G220800.2.v4.1 annot-version=v4.1
MATLNTTSSSFHSSALPYHFSLSSSKPNIRSGGRGVIRCCALMSSSTTSKWQGQSRRSLLSNSLLLSHFLFVPNDAIAGSFFDNYVKRKKLDPLEAYVPA
VILTELQIKDLEKILDVDQPQFGNYRSLLRSGPAASLRVNIRAVAQYASDAGNGNAAFNNVDQCLSALEELDSLLLRASRNEPDASVKSMKAKVGIALAA
MESLLQTVPSDVLDKGKAVADAYRTPDEDSEAEILDPELKQLESIL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G26340 unknown protein Potri.006G220800
[exp]
0 1
AT1G47480 alpha/beta-Hydrolases superfam... Potri.009G104900
[exp]
1.73 0.9544
AT5G45680 ATFKBP13 FK506 BINDING PROTEIN 13, FK50... Potri.001G075500
[exp]
2.64 0.9688
AT3G25660 Amidase family protein (.1) Potri.018G086350
[exp]
4.24 0.9477
AT4G09040 RNA-binding (RRM/RBD/RNP motif... Potri.005G161000
[exp]
11.48 0.9567
AT3G63540 Mog1/PsbP/DUF1795-like photosy... Potri.009G062500
[exp]
13.85 0.9520
AT3G16250 PnsB3, NDF4 Photosynthetic NDH subcomplex... Potri.001G186800
[exp]
14.14 0.9537
AT5G19370 rhodanese-like domain-containi... Potri.009G069300
[exp]
15.62 0.9217
AT5G52970 thylakoid lumen 15.0 kDa prote... Potri.016G092300
[exp]
17.60 0.9531
AT1G32520 unknown protein Potri.003G089900
[exp]
22.27 0.9480
AT1G12250 Pentapeptide repeat-containing... Potri.003G112900
[exp]
24.39 0.9497

Potri.006G220800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.