Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33210 1183 / 0 SLOMO SLOW MOTION, F-box family protein (.1) AT5G01720 70 / 6e-12 RNI-like superfamily protein (.1) AT4G15475 66 / 7e-11 F-box/RNI-like superfamily protein (.1) AT2G25490 64 / 5e-10 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 61 / 5e-09 EBF2 EIN3-binding F box protein 2 (.1) AT1G77000 57 / 3e-08 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT1G21410 56 / 6e-08 SKP2A F-box/RNI-like superfamily protein (.1) AT4G30640 52 / 7e-07 RNI-like superfamily protein (.1) AT5G23340 49 / 2e-05 RNI-like superfamily protein (.1) AT5G57900 47 / 6e-05 SKIP1 SKP1 interacting partner 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G048700 [exp] 1581 / 0 AT4G33210 1204 / 0.0 SLOW MOTION, F-box family protein (.1) Potri.006G254100 [exp] 81 / 3e-15 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 72 / 1e-12 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G068500 [exp] 66 / 8e-11 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 66 / 2e-10 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G185700 [exp] 59 / 7e-09 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) Potri.002G074700 [exp] 54 / 3e-07 AT1G21410 518 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.016G128400 [exp] 54 / 4e-07 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 54 / 5e-07 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026472 [exp] 1266 / 0 AT4G33210 1225 / 0.0 SLOW MOTION, F-box family protein (.1) Lus10038067 [exp] 1256 / 0 AT4G33210 1215 / 0.0 SLOW MOTION, F-box family protein (.1) Lus10012764 [exp] 81 / 6e-15 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10001264 [exp] 70 / 6e-12 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10012214 [exp] 68 / 4e-11 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10002913 [exp] 67 / 5e-11 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002165 [exp] 62 / 2e-09 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002014 [exp] 60 / 1e-08 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10034013 [exp] 60 / 1e-08 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10013444 [exp] 59 / 1e-08 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.006G220900.2 pacid=42768151 polypeptide=Potri.006G220900.2.p locus=Potri.006G220900 ID=Potri.006G220900.2.v4.1 annot-version=v4.1 ATGAAGATTTGGTGTTTCTCGTGCTTCATTTTCGGTAAAGAAGAAGAAGAAGATAACAAAGCCATGAGAGAGGGCATTTCAGAAAATGAAGGCAAGACCG AGGACAATCTTGGAAATAACGAGGAGGAGGAAGATACTGAGGCGATTGCATCGAGAGATATCCGCCGTGAGCGTTATGGCCGGGAGTCGATGAGGTGGAT TGAGGAAATGATTAGGGCGATGCAACGTGCTCGTAGTGGTTTTGGTGGCGGAGGCAGCAGCGGTACGACTGATTGGGGAGAGGTGGGGCAGGGTTTCGAG GAGGAGGGTCAATTTGTGGCTCCTCCTCTTGCTTTGAGGAGGTCTGCGTTTTGTACCTCGTGGCTGGGACGGGGAGAAAATAGTGGTAGTAGTTCTGCAG TGGCAGAGGCTGCCGGGAGTGGTAATGGGGGGTGCGATCGTGATTCACATAATAAAAGGGCTAAAGTTTACTCCTATTCTAATGACTGTCACTATGCTGC GGTAATGGCTTCAGATGCTGGCAATTCTACTTCATCAGCGGATAGACACCTTGGTTTAAGTCAGAGCTCTTCAATTCCATCCAATAATGAGATTTTTTAT CATAACTTCATGTGGAATAACAACAGCGATGATAATCCCTTTGATTCTAATGGTGCAAGAGATGATGGTGATGATAGCGGCACTTCCAAGTCAGAAGACT TAGAAGTTAGGATGGATCTTACAGATGACTTGTTGCATATGGTTTTCTCGTTCTTGGACCCCATTAATCTATGTCGGGCTGCGATGGTTTGTAGGCAGTG GCGAGCAGCTAGTGCTCATGAAGACTTCTGGAGGTGTTTGAATTTTGAGAATCGAAACATATCTGTAGAACAATTTGAGGACATGTCTCGGCGATACCCA AATGCCACTGAAGTGAATATTTATGGTGCTCCTGCTATTCACTTGCTTGTTATGAAAGCACTCTTTTCTTTAAGAAATCTTGAGACTTTAACCGTAGGAA AAGGACAGCTAGGGGATCCATTTTTTGGTGCCTTGGGAGATTGTATCATGTTGAAGAGTTTGAATGTCAATGATGCTACTCTGGGTAGTGGTATCCAGGA GATACCAATAAACCATGATAGATTGTGTCATCTTCAACTGACAAAATGCCGAGTGATGAGAATATCTGTCAGGTGTCCACAACTTGAGACTTTGTCTTTG AAGCGCAGCAACATGGCACAGGCTGTGCTGAATTGTCCTCTCTTGCGTCTCCTTGATATAGGGTCTTGCCACAAGCTTACAGATGCAGCAATTCGTTCAG CAGCAATTTCATGCCCCCAGTTAGAGTCTTTAGACATGTCAAATTGTTCATGTGTGAGTGATGAGACACTGCGTGAAATAGCCCTCACTTGTGCTAATCT CCACATTCTTAATGCATCTTATTGTCCAAACATATCACTTGAGTCTGTTAGGATGCCAATGTTAACTGTTCTCAAGCTTCATAGCTGTGAGGGCATCACT TCAGCTTCAATGTCTGCGATTGCATATAGTTATATGCTGGAGGTTTTGGAGCTTGACAATTGCAGTCTTCTGACTTCTGTGTCCTTGGATCTCCCTCGCC TGCAAAACATAAGATTAGTACATTGTCGAAAATTTGCTGATCTGAACTTACAAAGTATCATGCTATCATCTATAATGTTGTCTAATTGCCCAGCCCTTCA TCGAATCAATATCACTTCCAATTCGCTTCAAAAACTAGCGTTGCAGAAACAGGAAAACCTAACAACATTAGCATTGCAGTGTCAATATTTGCAAGAAGTG GACCTCACAGATTGTGAATCTCTGACTAATTCTATTTGTGAAGTTTTTAGTGATGGTGGTGGATGCCCTATGCTAAAATCATTGGTTCTTGATAATTGCG AGGCCTTGACAGCTGTGCGATTCCACAGCACTTCTTTAGTCAGTCTTTCCCTAGTTGGTTGTCGTGCTATTACTGCTCTTGATCTGGCGTGCCCTTCTCT AGAGCTTGTTTGTTTGGATGGCTGTGATCATCTTGAGGAAGCATCATTCTGCCCAGTTGCTCTCCGATCACTCAATTTGGGAATATGTCCCAAATTGAAA ATCCTTAGCATTGAAGCACCATGCATGGTGTCCCTTGAGTTAAAAGGATGTGGTGTATTATCTGAAGCATCTATTAATTGTCCCCTCTTGACGTCTCTGG ATGCTTCATTTTGCAGCCAACTCAAGGATGACTGCTTGTCTGCAACCACTGCATCCTGCCCACTGATTGGGTCATTGATTTTAATGTCTTGCCCTTCAGT TGGTTCTGACGGACTACTTTCTTTGCAGCGGCTTCCACATTTGTCTGTTCTTGATTTGTCATACACTTTTTTGATGAATCTGCAGCCAGTGTTCGACTCT TGTTTGCAACTGAAGGTACTAAAATTACAAGCATGCAAATATCTTACTGACACATCATTGGAGCCTCTTTACAAGGATGGTGCTCTTCCAGCACTTCAGG AGTTGGACTTGTCTTATGGGACCCTTTGTCAATCTGCAATCGAAGAGCTTCTTGCTTGTTGTAGACACCTTACTCACTTGAGCTTGAATGGCTGTGTAAA TATGCATGACCTGAATTGGGGATGCAGTGGTGGTCAGCTTTCTGAGTTGCCAGGCAAATTTAGTTCATCTGCCTTGTTCTCTCATGAGAATATTCTTGTG CCACCTGAGCAGCCAAATCGCTTATTGCAGAACCTCAACTGTGTTGGTTGTCCGAATATTAGGAAAGTTGTCATTCCACCAGTGGCCCTTTGTTTGCACC TGTCTTCACTAAACCTTTCTTTATCTGCCAATTTGAAGGAAGTCGATGTTGTTTGCTTTAATTTGTGCTTTCTTAATTTGAGCAATTGTTGCTCCTTGGA AATATTGAAGCTTGAGTGTCCAAGGCTGACTAGTCTTTTTCTCCAGTCTTGTAACATTGATGAGGAAGCTGTTGAAGCTGCCATATCTCAATGTGGCATG CTGGAGACTCTTGATGTACGTTTTTGTCCGAAGATATGCTCAATAAGCATGGGCCGATTACGTGCAGCCTGCCCGAGTTTAAAGCGCATCTTTAGTAGCT TGTCACCCTCGTAA
AA sequence Show only first row Show all	>Potri.006G220900.2 pacid=42768151 polypeptide=Potri.006G220900.2.p locus=Potri.006G220900 ID=Potri.006G220900.2.v4.1 annot-version=v4.1 MKIWCFSCFIFGKEEEEDNKAMREGISENEGKTEDNLGNNEEEEDTEAIASRDIRRERYGRESMRWIEEMIRAMQRARSGFGGGGSSGTTDWGEVGQGFE EEGQFVAPPLALRRSAFCTSWLGRGENSGSSSAVAEAAGSGNGGCDRDSHNKRAKVYSYSNDCHYAAVMASDAGNSTSSADRHLGLSQSSSIPSNNEIFY HNFMWNNNSDDNPFDSNGARDDGDDSGTSKSEDLEVRMDLTDDLLHMVFSFLDPINLCRAAMVCRQWRAASAHEDFWRCLNFENRNISVEQFEDMSRRYP NATEVNIYGAPAIHLLVMKALFSLRNLETLTVGKGQLGDPFFGALGDCIMLKSLNVNDATLGSGIQEIPINHDRLCHLQLTKCRVMRISVRCPQLETLSL KRSNMAQAVLNCPLLRLLDIGSCHKLTDAAIRSAAISCPQLESLDMSNCSCVSDETLREIALTCANLHILNASYCPNISLESVRMPMLTVLKLHSCEGIT SASMSAIAYSYMLEVLELDNCSLLTSVSLDLPRLQNIRLVHCRKFADLNLQSIMLSSIMLSNCPALHRINITSNSLQKLALQKQENLTTLALQCQYLQEV DLTDCESLTNSICEVFSDGGGCPMLKSLVLDNCEALTAVRFHSTSLVSLSLVGCRAITALDLACPSLELVCLDGCDHLEEASFCPVALRSLNLGICPKLK ILSIEAPCMVSLELKGCGVLSEASINCPLLTSLDASFCSQLKDDCLSATTASCPLIGSLILMSCPSVGSDGLLSLQRLPHLSVLDLSYTFLMNLQPVFDS CLQLKVLKLQACKYLTDTSLEPLYKDGALPALQELDLSYGTLCQSAIEELLACCRHLTHLSLNGCVNMHDLNWGCSGGQLSELPGKFSSSALFSHENILV PPEQPNRLLQNLNCVGCPNIRKVVIPPVALCLHLSSLNLSLSANLKEVDVVCFNLCFLNLSNCCSLEILKLECPRLTSLFLQSCNIDEEAVEAAISQCGM LETLDVRFCPKICSISMGRLRAACPSLKRIFSSLSPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Potri.006G220900 [exp]	0	1
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Potri.006G117300 [exp]	1.41	0.8866
AT3G13860		HSP60-3A	heat shock protein 60-3A (.1)		Potri.003G039475 [exp]	5.09	0.8790
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Potri.013G006000 [exp]	7.74	0.8619	MOM.2,1
					Potri.010G242200 [exp]	12.00	0.8167
AT3G19780			unknown protein		Potri.007G070400 [exp]	14.38	0.8016
AT5G17910			unknown protein		Potri.019G044500 [exp]	14.49	0.8422
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Potri.005G010133 [exp]	15.19	0.8259
AT1G27461			unknown protein		Potri.014G015300 [exp]	16.97	0.7496
					Potri.019G023500 [exp]	17.32	0.7732
AT5G25070			unknown protein		Potri.002G000800 [exp]	17.74	0.8376

Compare expression of checked genes

Potri.006G220900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.