Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21482 675 / 0 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT2G41510 412 / 2e-138 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT3G63440 392 / 4e-131 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT1G75450 392 / 5e-131 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT5G56970 332 / 6e-108 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT2G19500 318 / 5e-103 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT4G29740 309 / 5e-99 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G203600 [exp] 407 / 2e-137 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.001G020900 [exp] 404 / 3e-136 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.002G030500 [exp] 399 / 4e-134 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.016G044100 [exp] 399 / 7e-134 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.005G232300 [exp] 397 / 5e-133 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.006G047900 [exp] 392 / 5e-131 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.006G152500 [exp] 353 / 5e-116 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.007G066100 [exp] 306 / 1e-97 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026471 [exp] 654 / 0 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10024289 [exp] 392 / 2e-131 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10031188 [exp] 307 / 2e-98 AT5G56970 484 / 1e-167 cytokinin oxidase 3 (.1) Lus10038065 [exp] 295 / 6e-98 AT5G21482 285 / 5e-94 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10003845 [exp] 297 / 9e-96 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10031200 [exp] 295 / 1e-93 AT2G19500 464 / 1e-159 cytokinin oxidase 2 (.1) Lus10038066 [exp] 251 / 4e-80 AT5G21482 259 / 4e-84 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10005317 [exp] 237 / 6e-73 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10039574 [exp] 238 / 4e-72 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10035433 [exp] 226 / 5e-69 AT2G41510 424 / 8e-146 cytokinin oxidase/dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF09265 [poplar] [flax] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Potri.006G221000.1 pacid=42767736 polypeptide=Potri.006G221000.1.p locus=Potri.006G221000 ID=Potri.006G221000.1.v4.1 annot-version=v4.1 ATGATTGCTTACTTAGAGAGATTTATCCACGAGAACGATAGCGAATCCAGACCTAACGACGACGAGAAAGACCAGCTTCCAAACATATGTCACTCTCTAG ACCTCCAAGGCACCATCGATTGTGTGGCTACCGGTTTGGCCGGTAAGGATTTCGGCGGCATGTACACATGCGAGCCTCTAGCTCTAATCAGACCAGCAAG TGCCGATGACGTGGCACGTGTAGTTAGAGCAGCTTACCGGTCACCCAATCTGACGGTTGCAGCAAGGGGTAACGGACACTCTATCAACGGGCAAGCCATG AGCGACCGAGGACTTGTCATGGACATGAGGTCCACTGAAGGAAACCATTTTGAGGTTGTAAGAATGAATGGGGAAACCTTCGTCGATGTGTCGGGAGGGG CATTATGGGAAGATGTGTTAAAACGATGCGTTTTGGAGTATAAATTAGCTCCAAGGTCATGGACTGATTACCTTGGTTTAACGGTGGGTGGCACGCTATC TAACGCCGGCGTAAGTGGTCAGGCTTTTCGGTTTGGCCCACAAACGTGCAACGTAGCAGAGTTGGATGTTGTTACTGGTGAAGGACAACTAATGACTTGC AATAAAAATGAAAACAGTGAATTGTTTTTTGGTGCACTTGGTGGTCTTGGCCAGTTCGGTATCGTTACCAGGGCCAGAGTAGTGGTCCAGTCTGCACCAG ACATGGTGAGATGGATAAGGGTGGTGTACTCTGAGTTTGAAGACTTTACTCGAGATGCTGAGTGGCTGGTGACCCGTCCAGAGGGCGAGTCATTCGATTA TGTTGAAGGGTTCGTGTTTGTGAACAGTGTTGATGACCCTGCAAATGGGTGGCCAACCGTGCCGTTAGACCCGGACCAAGGATTCGACCCAAGCCGTGTC CCTCGAACCGCCGGCTCCGTTCTTTACTGCCTTGAAGCAGCTCTGCATTACCAAAAGACTGACCACCCCTCCACGGTGGACAAGGCTGTGAACAGCTTGC TTGGGCGGCTAGGATTTATCGAGGATATGAAATTCCAAGTGGATGTGAGCTACGTCGAGTTCCTCTTGCGTGTGAAGCATGCAGAGGAATCCGCTAGGGA AAATGGTACATGGGACGCTCCTCACCCCTGGTTGAATATGTTCGTGTCAAAGAGGGACGTAGCTGATTTTGATCGTGTGGTGTTCAAGAGGATGTTGAAA GAGGGTGTTGGTGGGCCCATACTAGTCTACCCTCTCCTGCGAAGCAAGTGGGACGACCGGACATCTGTGGTGTTACCAGCGGAAGGGGAAATCTTTTACT TGGTGGCATTGCTCCGATTCACCATGCCATGCCCAAAGGCCCCTTCTGCCGAGAAATTGGTGTCTCAAAACAGAGAGATTGTCCAATTTTGTGTCAAGGA AGGTCTCGACTTCAAATTGTACCTCCCTCACTACCAATCTGAAGAGGAATGGAAAAGACACTTTGGAAGTCAGTGGTCAAGATTTGTTGAGAGGAAGGCC AGTTTCGATCCCCTGGCCATTCTCGCACCAGGCCAAAAAATATTCAAGAGGATCTCCCAACTCTAG
AA sequence Show only first row Show all	>Potri.006G221000.1 pacid=42767736 polypeptide=Potri.006G221000.1.p locus=Potri.006G221000 ID=Potri.006G221000.1.v4.1 annot-version=v4.1 MIAYLERFIHENDSESRPNDDEKDQLPNICHSLDLQGTIDCVATGLAGKDFGGMYTCEPLALIRPASADDVARVVRAAYRSPNLTVAARGNGHSINGQAM SDRGLVMDMRSTEGNHFEVVRMNGETFVDVSGGALWEDVLKRCVLEYKLAPRSWTDYLGLTVGGTLSNAGVSGQAFRFGPQTCNVAELDVVTGEGQLMTC NKNENSELFFGALGGLGQFGIVTRARVVVQSAPDMVRWIRVVYSEFEDFTRDAEWLVTRPEGESFDYVEGFVFVNSVDDPANGWPTVPLDPDQGFDPSRV PRTAGSVLYCLEAALHYQKTDHPSTVDKAVNSLLGRLGFIEDMKFQVDVSYVEFLLRVKHAEESARENGTWDAPHPWLNMFVSKRDVADFDRVVFKRMLK EGVGGPILVYPLLRSKWDDRTSVVLPAEGEIFYLVALLRFTMPCPKAPSAEKLVSQNREIVQFCVKEGLDFKLYLPHYQSEEEWKRHFGSQWSRFVERKA SFDPLAILAPGQKIFKRISQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Potri.006G221000 [exp]	0	1
AT1G27340			Galactose oxidase/kelch repeat...		Potri.003G062000 [exp]	2.44	0.8072
AT3G60340			alpha/beta-Hydrolases superfam...		Potri.002G137200 [exp]	7.68	0.8165
AT2G30140			UDP-Glycosyltransferase superf...		Potri.009G077200 [exp]	8.71	0.7976
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Potri.011G096600 [exp]	9.48	0.7903	Pt-TCP1.1
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.007G118800 [exp]	12.00	0.8026
AT1G67400			ELMO/CED-12 family protein (.1...		Potri.010G060700 [exp]	12.96	0.7892
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Potri.001G161400 [exp]	15.16	0.7951	AHA10.1
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.002G054100 [exp]	16.58	0.7807
AT2G37260	WRKY	DSL1, ATWRKY44,...	TRANSPARENT TESTA GLABRA 2, DR...		Potri.006G133200 [exp]	20.71	0.7626
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.002G159400 [exp]	22.80	0.7882	Pt-TAN1.2

Compare expression of checked genes

Potri.006G221000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.