Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07320 343 / 4e-119 EMB2784, RPL4 EMBRYO DEFECTIVE 2784, ribosomal protein L4 (.1.2.3.4) AT2G20060 86 / 3e-19 Ribosomal protein L4/L1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G004800 [exp] 92 / 2e-21 AT2G20060 465 / 1e-166 Ribosomal protein L4/L1 family (.1) Potri.006G270501 [exp] 60 / 1e-11 AT2G20060 131 / 3e-39 Ribosomal protein L4/L1 family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018212 [exp] 363 / 3e-127 AT1G07320 332 / 8e-115 EMBRYO DEFECTIVE 2784, ribosomal protein L4 (.1.2.3.4) Lus10040693 [exp] 366 / 6e-127 AT1G07320 334 / 2e-114 EMBRYO DEFECTIVE 2784, ribosomal protein L4 (.1.2.3.4) Lus10005427 [exp] 85 / 3e-19 AT2G20060 390 / 3e-138 Ribosomal protein L4/L1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00573 [poplar] [flax] Ribosomal_L4 Ribosomal protein L4/L1 family
Representative CDS sequence Show only first row Show all	>Potri.006G221100.2 pacid=42770545 polypeptide=Potri.006G221100.2.p locus=Potri.006G221100 ID=Potri.006G221100.2.v4.1 annot-version=v4.1 ATGTCCGCCTCCACTTCACTCTCCTTCTTCTCCTCCTCTCTTTTCCTCTCTTCTTCTCACAACAAAATCCCCAAATTGACCTCATTATCCACTACGAAAC CCCAATATTCCCTTAAATCCCTCTCCATTTCTTGCCAAGTAGCAACCCTTCCAATCCTCTCTTTCACCGGGGAAAAAATCGGCGAAACTTACTTAGACCT CAAGTCAGCGCCACCCGAGACCGCTCGTGCTGTCGTTCACCGAGGAATCATCACAGACCAACAAAATAAGCGACGTGGCACTGCCTCAACTCTCACCCGC GGTGAAGTTAGAGGCGGTGGCAGAAAACCCTACCCTCAAAAGAAAACGGGGCGAGCTCGCCGTGGGTCCATGCGCAGCCCACTTCGCCCTGGTGGTGGCG TGATATTTGGGCCCAAGCCCAGAGACTGGTCCATTAAGATAAACAGGAAGGAAAAACGGCTAGCCATGTCGACGGCTTTATCAAGTGCTGCGAGTGAGAG CGAGAGCGTGATTTGTGTTGAGGAATTTGGGGATAAATTTGAGAAGCCGAAGACGAAGGAGTTTATAGAAGCAATGAATCGGTGGGGATTGGACCCGAAA GAGAAAGTTATGTTTTTGATGATGGATGTTAGTGATAATGTGGGATTGTCGAGCAGGAATATTGGGACTTTGAGGATGTTGACGCCCAGGACTTTGAATT TGTTCGATATTTTGAATTCGGATAAGTTGGTTCTTACGCCCGATACTGTGGATTATTTGAATGGTAGATATGGAGTTGATTTTGAAGTAGAGACCGACGA AGACGATGAAGAGGATGATCAAGATGAAACTGAAGACACAGAAGGAAATGAAAATGCTGATGCAGCAGACTGA
AA sequence Show only first row Show all	>Potri.006G221100.2 pacid=42770545 polypeptide=Potri.006G221100.2.p locus=Potri.006G221100 ID=Potri.006G221100.2.v4.1 annot-version=v4.1 MSASTSLSFFSSSLFLSSSHNKIPKLTSLSTTKPQYSLKSLSISCQVATLPILSFTGEKIGETYLDLKSAPPETARAVVHRGIITDQQNKRRGTASTLTR GEVRGGGRKPYPQKKTGRARRGSMRSPLRPGGGVIFGPKPRDWSIKINRKEKRLAMSTALSSAASESESVICVEEFGDKFEKPKTKEFIEAMNRWGLDPK EKVMFLMMDVSDNVGLSSRNIGTLRMLTPRTLNLFDILNSDKLVLTPDTVDYLNGRYGVDFEVETDEDDEEDDQDETEDTEGNENADAAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Potri.006G221100 [exp]	0	1
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Potri.001G384600 [exp]	2.44	0.9849
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Potri.010G210200 [exp]	2.82	0.9838
AT3G47860		CHL	chloroplastic lipocalin (.1)		Potri.001G420800 [exp]	3.16	0.9774
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Potri.002G180400 [exp]	4.89	0.9819	TMP14.1
AT5G21430		NdhU, CRRL	NADH dehydrogenase-like comple...		Potri.006G221900 [exp]	6.48	0.9777
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Potri.019G087300 [exp]	8.48	0.9775
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Potri.006G139600 [exp]	8.83	0.9789	Lhca6,Pt-LHCA2*1.1
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Potri.004G140500 [exp]	9.79	0.9803
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Potri.005G079700 [exp]	10.67	0.9737
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Potri.008G101100 [exp]	10.72	0.9798

Compare expression of checked genes

Potri.006G221100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.