Plant FIBer expression Database

Potri.006G221700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G19560 663 / 0 ESSP1, AtTHP1, EER5 ectopic expression of seed storage proteins 1, ENHANCED ETHYLENE RESPONSE 5, proteasome family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032680
[exp]
714 / 0 AT2G19560 683 / 0.0 ectopic expression of seed storage proteins 1, ENHANCED ETHYLENE RESPONSE 5, proteasome family protein (.1)
Lus10008561
[exp]
711 / 0 AT2G19560 681 / 0.0 ectopic expression of seed storage proteins 1, ENHANCED ETHYLENE RESPONSE 5, proteasome family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF01399 PCI PCI domain
Representative CDS sequence
>Potri.006G221700.1 pacid=42767352 polypeptide=Potri.006G221700.1.p locus=Potri.006G221700 ID=Potri.006G221700.1.v4.1 annot-version=v4.1
ATGGCGTACTTGAGCATGGGAGAAGCTCACAGAAGAATAACGGAATACCTAAATCGCTTCTCCGACGCCGTTTCCTTCCAAGACGGTGCTTCTCTGAAAC
AACTCCTCTCCGTCTCCTCCGACTCCCCTTCTCTCCTCTCCCTCGCCGATTCTCTCAATGTTTTCCAGGACGCAAATAGATTAATTAAGCAATCAGACAA
GTACTCGCAGTTTGGGGAAATAATAGCACCTTTTTTCCGTTGTCTGCAAAGTTATAGAATTGGCAACCTGCTCGATGCTTACCACGCCTTCGAAAAAGCA
GCCAATGCTTTTCTTCCCGAGTTTCGGAATTGGGAATCAGCGTGGGCTTTGGAGGCATTGTATGTTATTGCCTATGAAATTAGGATTCTTGCAGAGAGGG
CGGATAGAGAGTTAGCTTCCAATGGGAAATCACCAGAAAAATTGAAGGGAGCTGGTTCTTTCCTCATGAAAGTGTTTGGTGTTCTTGCTGGAAAAGGACC
AAAACGTGTGGGAGCATTATATGTGACTTGCCAGCTGTTCAAAATTTACTTCAAACTTGGTACAGTTCACCTTTGCAGAAGTGTGATACGCAGCATTGAA
ACTGCTCGATTTTTTGATTTTGAGGAATTTCCTAAAAGGGATAAGGTCACCTACATGTATTACACTGGTCGTTTAGAAGTTTTTAATGAAAATTTTCCTG
CTGCTGATCATAAATTATCGTATGCCTTAATGCACTGCAACCCCCATCATGAAGCAAATATCAGGATGATTTTAAAATATTTGATACCTGTGAAGCTTTC
AATAGGAATTCTACCCGAAGATCAGCTTTTAGAGAAGTATGGCCTAGTTGAGTACAGTAATGTCGTCCAAGCTCTGAAAAGGGGTGATCTCCGGCTGCTT
CGACAAGCTCTCCAGGAGCATGAAGACCGGTTTCTAAGGTCAGGTGTATTTCTTGTCCTGGAGAAGCTAGAACTTCAAGTTTACCAAAGATTGCTAAAGA
AAATTTACATCATCCAAAAGCAGAGGGACCCAAGCAAAGCTCACCAGATCAAATTGGAAGTAATTGTTAAAGCATTAAAGTGGCTTGAGATAGACATGGA
TTTGGACGAGGTGGAATGTATAGTGGCCATATTAATATACAAGAATCTTGTGAAAGGGTACTTTGCTCACAAGAGCAAAGTTGTAGTATTGAGCAAGCAG
GATCCTTTCCCCAAGCTGAATGCAAAGCCTGTTAATTCATAG
AA sequence
>Potri.006G221700.1 pacid=42767352 polypeptide=Potri.006G221700.1.p locus=Potri.006G221700 ID=Potri.006G221700.1.v4.1 annot-version=v4.1
MAYLSMGEAHRRITEYLNRFSDAVSFQDGASLKQLLSVSSDSPSLLSLADSLNVFQDANRLIKQSDKYSQFGEIIAPFFRCLQSYRIGNLLDAYHAFEKA
ANAFLPEFRNWESAWALEALYVIAYEIRILAERADRELASNGKSPEKLKGAGSFLMKVFGVLAGKGPKRVGALYVTCQLFKIYFKLGTVHLCRSVIRSIE
TARFFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADHKLSYALMHCNPHHEANIRMILKYLIPVKLSIGILPEDQLLEKYGLVEYSNVVQALKRGDLRLL
RQALQEHEDRFLRSGVFLVLEKLELQVYQRLLKKIYIIQKQRDPSKAHQIKLEVIVKALKWLEIDMDLDEVECIVAILIYKNLVKGYFAHKSKVVVLSKQ
DPFPKLNAKPVNS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G19560 ESSP1, AtTHP1, ... ectopic expression of seed sto... Potri.006G221700
[exp]
0 1
AT3G46020 RNA-binding (RRM/RBD/RNP motif... Potri.001G236200
[exp]
1.73 0.8409
AT5G50860 Protein kinase superfamily pro... Potri.012G103900
[exp]
6.48 0.8115
AT1G34360 translation initiation factor ... Potri.009G137000
[exp]
9.53 0.7294
AT2G35790 unknown protein Potri.010G219400
[exp]
16.70 0.7843
AT2G18850 SET domain-containing protein ... Potri.006G168900
[exp]
24.79 0.7089
AT1G47890 AtRLP7 receptor like protein 7 (.1) Potri.012G020895
[exp]
54.32 0.7767
AT1G30825 DIS2, ARPC2, AR... DISTORTED TRICHOMES 2, ACTIN-R... Potri.003G157700
[exp]
57.44 0.7799 Pt-ARPC2.1
Potri.007G085800
[exp]
65.66 0.7574
AT3G19950 RING/U-box superfamily protein... Potri.012G036700
[exp]
87.77 0.7519
AT1G09810 ECT11 evolutionarily conserved C-ter... Potri.004G223800
[exp]
88.17 0.7136

Potri.006G221700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.