Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21430 190 / 3e-61 NdhU, CRRL NADH dehydrogenase-like complex U, CHLORORESPIRATORY REDUCTION L, Chaperone DnaJ-domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G018400 [exp] 44 / 3e-05 AT1G74250 460 / 2e-155 DNAJ heat shock N-terminal domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027616 [exp] 178 / 2e-56 AT5G21430 174 / 8e-55 NADH dehydrogenase-like complex U, CHLORORESPIRATORY REDUCTION L, Chaperone DnaJ-domain superfamily protein (.1.2) Lus10011955 [exp] 88 / 2e-21 AT5G21430 99 / 1e-25 NADH dehydrogenase-like complex U, CHLORORESPIRATORY REDUCTION L, Chaperone DnaJ-domain superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G221900.1 pacid=42766885 polypeptide=Potri.006G221900.1.p locus=Potri.006G221900 ID=Potri.006G221900.1.v4.1 annot-version=v4.1 ATGTCTGTGTCATCGACAACAGCAGCTGTGTATATTTCCCGGCAAAATTTCTGTAATGGGGCGTGCAAAAATGGCAATGTATTCTTAACATCGGTCTCAT TTGCATCGAAACAACGTAGATTTTATATTAGAAGCTCTAGCGATGGAGCAGCCGAGACTGCAGCAACTGAGGTAGAAGATTCAGAGAATTACATTGAAGT TCCAGGAGGGCCTCCGTCTTTGATTTCTGCTCTTAATGTGGAGAGAGCTCTTCGTGGCATACCGATTACAGATGTGGATCACTATGGCAGACTTGGGATC CAAAGAAGATCTTCATATGAAGAGGTTACGGTTGCATATAAAAACAAGGTCGATGAGCTCCTGAATCAGGGGCTTGATGAAGCAGAAGTCAGGGAAAAAA TGGAACTTCTAAAAGAATCCTACACAATTTTATCCTCTAGAGATGAGAGAAGAATGTACGATTGGAGCTTGGTCAGGAGTGAGAAACCAGAAAGATACAT GTGGCCTTATGAAGTTGACTTTACACCAACTGCACCTCCTCCGCCACAGGAACCAGAGGATGAGGGACCGACAAGATTGGTGGGATACTTTGCACTGGCA TGGTTAGTCCTAGCCGTCACGTTATCCGTTACCCTCAACAGATAA
AA sequence Show only first row Show all	>Potri.006G221900.1 pacid=42766885 polypeptide=Potri.006G221900.1.p locus=Potri.006G221900 ID=Potri.006G221900.1.v4.1 annot-version=v4.1 MSVSSTTAAVYISRQNFCNGACKNGNVFLTSVSFASKQRRFYIRSSSDGAAETAATEVEDSENYIEVPGGPPSLISALNVERALRGIPITDVDHYGRLGI QRRSSYEEVTVAYKNKVDELLNQGLDEAEVREKMELLKESYTILSSRDERRMYDWSLVRSEKPERYMWPYEVDFTPTAPPPPQEPEDEGPTRLVGYFALA WLVLAVTLSVTLNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G21430		NdhU, CRRL	NADH dehydrogenase-like comple...		Potri.006G221900 [exp]	0	1
AT5G22620			phosphoglycerate/bisphosphogly...		Potri.011G052200 [exp]	1.41	0.9849
AT1G03600		PSB27	photosystem II family protein ...		Potri.002G056300 [exp]	2.23	0.9779
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Potri.002G180400 [exp]	2.82	0.9840	TMP14.1
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Potri.010G210200 [exp]	4.89	0.9780
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Potri.006G139600 [exp]	4.89	0.9805	Lhca6,Pt-LHCA2*1.1
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Potri.006G221100 [exp]	6.48	0.9777
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Potri.002G069000 [exp]	8.48	0.9637
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Potri.005G079700 [exp]	10.00	0.9711
AT5G52970			thylakoid lumen 15.0 kDa prote...		Potri.016G092300 [exp]	10.39	0.9695
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Potri.010G255500 [exp]	11.31	0.9730

Compare expression of checked genes

Potri.006G221900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.