Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26350 519 / 0 PEX10, ATPEX10 peroxin 10 (.1) AT4G03510 60 / 5e-10 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT4G28270 55 / 1e-08 ATRMA2 RING membrane-anchor 2 (.1) AT4G27470 55 / 2e-08 ATRMA3 RING membrane-anchor 3 (.1) AT1G19310 54 / 6e-08 RING/U-box superfamily protein (.1) AT2G42030 54 / 1e-07 RING/U-box superfamily protein (.1) AT3G58030 53 / 2e-07 RING/U-box superfamily protein (.1.2.3.4) AT2G23780 52 / 2e-07 RING/U-box superfamily protein (.1) AT1G74990 48 / 1e-06 RING/U-box superfamily protein (.1) AT2G44410 50 / 2e-06 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G042700 [exp] 58 / 2e-09 AT4G03510 157 / 1e-47 RING membrane-anchor 1 (.1.2) Potri.001G401600 [exp] 57 / 3e-09 AT4G27470 205 / 5e-66 RING membrane-anchor 3 (.1) Potri.011G051800 [exp] 57 / 3e-09 AT4G27470 163 / 8e-50 RING membrane-anchor 3 (.1) Potri.011G120800 [exp] 56 / 1e-08 AT4G27470 167 / 7e-51 RING membrane-anchor 3 (.1) Potri.001G229600 [exp] 54 / 2e-07 AT2G44410 191 / 6e-56 RING/U-box superfamily protein (.1) Potri.014G040400 [exp] 52 / 2e-07 AT1G19310 226 / 4e-75 RING/U-box superfamily protein (.1) Potri.002G133000 [exp] 52 / 2e-07 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1) Potri.005G127900 [exp] 52 / 2e-07 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1) Potri.006G193600 [exp] 53 / 3e-07 AT3G58030 389 / 2e-132 RING/U-box superfamily protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020007 [exp] 465 / 2e-164 AT2G26350 449 / 2e-158 peroxin 10 (.1) Lus10026206 [exp] 91 / 3e-19 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011184 [exp] 59 / 1e-09 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2) Lus10018489 [exp] 59 / 1e-09 AT4G03510 159 / 7e-48 RING membrane-anchor 1 (.1.2) Lus10016796 [exp] 53 / 1e-07 AT2G23780 242 / 3e-81 RING/U-box superfamily protein (.1) Lus10022492 [exp] 53 / 1e-07 AT2G23780 241 / 1e-80 RING/U-box superfamily protein (.1) Lus10016303 [exp] 53 / 1e-07 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1) Lus10010791 [exp] 52 / 1e-07 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1) Lus10033697 [exp] 51 / 3e-07 AT4G03510 149 / 1e-44 RING membrane-anchor 1 (.1.2) Lus10004162 [exp] 51 / 8e-07 AT3G58030 367 / 3e-124 RING/U-box superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04757 [poplar] [flax] Pex2_Pex12 Pex2 / Pex12 amino terminal region CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.006G222000.1 pacid=42766923 polypeptide=Potri.006G222000.1.p locus=Potri.006G222000 ID=Potri.006G222000.1.v4.1 annot-version=v4.1 ATGGGAATGAGAAGGCACGGACAATCCTCCGGTTCGAGCAATGACCCTGGGCCCAGTGGAGAATCCGGTCGGACTACTTCCTCGACCACCACAACTAGCA ACGAACCACGGCGGTTTCCGCTAGCTGCTCAGCCAGAAATAATGAGAGCCGCCGAGAAAGATGACCAGTACGCTTCCTTTATTTACGACGCTTGCCGCGA CGCCATTCGTCACCTCTTTGGTACAAGAGTTGCTGTAGCTTACCAGAATGAGGCAAAGCTTTTAGGGCAAATGCTATATTATGTGTTGACAACAGGTTCA GGACAGCAAACCCTTGGTGAAGAGTATTGTGACGTTACTCAGGTTGCAGGGCCGCACGGACTTGCCCCAACACCAGCGAGGCGTGCTCTTTTCATTGTAT ATCAGACGGCTGTTCCTTATATTGCAGAAAGAATTAGTTCAAGAGTTGCGTCCCGTGCCATCGCACTTGATGATTCTCTGTCTGATGAGCCTTATAGAGA CATCGCTTCAGGGACCAGTCAAGCTCAATCCCCCATAATAATTGAATTACCATCTTCATCTTCTTCTGGGACATCTGTTTCTGTACTATCAAGGTTGAGG CAGAAATTTAATGGAATACGGATGCAAGCAATTCAAAGATGGCCTACGGTACTTCCTGTAGCTCGTGAATTTCTGCAATTGGTTCTTCGCACAAACCTTA TGTTCTTCTACTTTGAAGGCATGTATTATCATATATCCAAACGTGCATCTGGTATACGTTATGTATTTATTGGGAAACCATCCAATCAAAGGCCTAGATA CCAAATACTTGGTGTGTTCCTTCTCATTCAGCTGTGTATCATTGCTGCTGAAGGTCTCCGCCGCAGCAATTTATCTTCTATTGCAAGTTCAGTTCATCAG ACATCCTTGGTGTCCCACCAAACTGCAGGACGTGGTTTGCCTGTCTTGAATGAAGAAGGCAATTTGATACCTTTGGAGGCTGGCAATGGGAATTGGGTAT CAGATTCCACGTCAACTTCAGAGTCTAATGCAATAAGCAGCAGCAAATGCACACTCTGCTTGAGTAATCGGCAATACCCAACCGCTACAGCTTGTGGTCA TGTGTTCTGCTGGAATTGCATTATGGAATGGTGCAATGAGAAGCCTGAGTGCCCACTCTGCCGTACCCCCATAACTCATTCAAGCTTAGTTTGTTTGTAT CATTCAGACTTCTAG
AA sequence Show only first row Show all	>Potri.006G222000.1 pacid=42766923 polypeptide=Potri.006G222000.1.p locus=Potri.006G222000 ID=Potri.006G222000.1.v4.1 annot-version=v4.1 MGMRRHGQSSGSSNDPGPSGESGRTTSSTTTTSNEPRRFPLAAQPEIMRAAEKDDQYASFIYDACRDAIRHLFGTRVAVAYQNEAKLLGQMLYYVLTTGS GQQTLGEEYCDVTQVAGPHGLAPTPARRALFIVYQTAVPYIAERISSRVASRAIALDDSLSDEPYRDIASGTSQAQSPIIIELPSSSSSGTSVSVLSRLR QKFNGIRMQAIQRWPTVLPVAREFLQLVLRTNLMFFYFEGMYYHISKRASGIRYVFIGKPSNQRPRYQILGVFLLIQLCIIAAEGLRRSNLSSIASSVHQ TSLVSHQTAGRGLPVLNEEGNLIPLEAGNGNWVSDSTSTSESNAISSSKCTLCLSNRQYPTATACGHVFCWNCIMEWCNEKPECPLCRTPITHSSLVCLY HSDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26350		PEX10, ATPEX10	peroxin 10 (.1)		Potri.006G222000 [exp]	0	1
AT3G07650	CO	COL9	CONSTANS-like 9 (.1.2.3.4)		Potri.014G170600 [exp]	4.47	0.8778	Pt-COL11.2
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.001G090800 [exp]	9.05	0.8723
AT5G24060			Pentatricopeptide repeat (PPR)...		Potri.004G072400 [exp]	9.94	0.8405
AT3G49140			Pentatricopeptide repeat (PPR)...		Potri.017G148600 [exp]	12.12	0.8483
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Potri.013G103551 [exp]	12.40	0.8368
AT1G53250			unknown protein		Potri.011G112300 [exp]	13.41	0.8641
AT5G36930			Disease resistance protein (TI...		Potri.011G012750 [exp]	17.66	0.8194
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Potri.004G166600 [exp]	18.24	0.8672
AT2G20740			Tetraspanin family protein (.1...		Potri.011G050900 [exp]	22.84	0.8539
AT1G68890			magnesium ion binding;thiamin ...		Potri.010G135500 [exp]	23.62	0.7992

Compare expression of checked genes

Potri.006G222000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.