Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19530 533 / 0 ACL5 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G23820 140 / 8e-39 SPDS1 spermidine synthase 1 (.1.2) AT1G70310 128 / 5e-34 SPDS2 spermidine synthase 2 (.1) AT5G53120 102 / 2e-24 SPMS, SPDS3, ATSPDS3 spermidine synthase 3 (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G089200 [exp] 458 / 8e-163 AT5G19530 447 / 2e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G151800 [exp] 455 / 1e-161 AT5G19530 445 / 7e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G094600 [exp] 124 / 7e-33 AT1G70310 538 / 0.0 spermidine synthase 2 (.1) Potri.008G147200 [exp] 124 / 2e-32 AT1G70310 532 / 0.0 spermidine synthase 2 (.1) Potri.012G002600 [exp] 105 / 1e-25 AT5G53120 582 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.015G018900 [exp] 96 / 5e-22 AT5G53120 545 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026457 [exp] 508 / 0 AT5G19530 485 / 4e-173 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10004913 [exp] 443 / 6e-157 AT5G19530 441 / 2e-156 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010538 [exp] 442 / 1e-156 AT5G19530 439 / 1e-155 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10033437 [exp] 397 / 2e-138 AT5G19530 410 / 1e-143 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10000469 [exp] 392 / 2e-136 AT5G19530 407 / 2e-142 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10030629 [exp] 126 / 1e-33 AT1G70310 531 / 0.0 spermidine synthase 2 (.1) Lus10030861 [exp] 126 / 3e-33 AT1G23820 514 / 0.0 spermidine synthase 1 (.1.2) Lus10029169 [exp] 123 / 3e-32 AT1G23820 562 / 0.0 spermidine synthase 1 (.1.2) Lus10039416 [exp] 117 / 5e-30 AT1G23820 509 / 0.0 spermidine synthase 1 (.1.2) Lus10012996 [exp] 112 / 7e-28 AT1G23820 537 / 0.0 spermidine synthase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01564 [poplar] [flax] Spermine_synth Spermine/spermidine synthase domain
Representative CDS sequence Show only first row Show all	>Potri.006G222200.1 pacid=42769912 polypeptide=Potri.006G222200.1.p locus=Potri.006G222200 ID=Potri.006G222200.1.v4.1 annot-version=v4.1 ATGGGTACTGAGGCAGTTGAGATCATCTATGCAAATGGTTTGTCTAAAATCTGTGATGGAATCAATCAAACTCATTCTGATGATCAGACTCACAATGATT CTTCTTGGTTTGAAGAATCCATTGATGAAGATCTTAAATGGTCTTTTGCTTTGAACAGCGTGCTGTGCAAGGTGACTAGTGAGTACCAGGACATAACTCT TTTGGACACCAAGCGTTTTGGAAAAGTTTTGGTGATTGATGGCAAGATGCAGAGTGCCGAAGTGGATGAGTTTATTTATCATGAATGTTTAATTCACCCT GCTCTGCTCTGCCACCCTAACCCTCAGAATGTGTTCATAATGGGAGGTGGAGAAGGGTCTGCTGCAAGAGAAGCCCTCAAGCACAAGTCAATAGAAAAAG TAGTCATGTGTGATATAGACCAGGAAGTTGTTGATTTCTGTCGTAGACATCTGACAGTAAATCAAGAAGCATTTTCGAACAAGAAGCTTGATTTAGTCAT TAATGATGCCAAGGCTGAAATAGAGAAGAGAAACGAAAAGTTTGATGTCATAGTTGGAGACTTGGCAGACCCAGTTGAAGGAGGGCCTTGCTATCAGCTC TACACAAAATCTTTCTATGAGCAAATTCTGAAGCCTAAACTGAATGACAATGGCATCTTTGTTACTCAGGCTGGACCAGCAGGAGTTTTCACCCACAAGG AGGTCTTCTCCTCTATATACAACACAATCAAACAAGTCTTCAAATACGTGGTTGCATACAGTGCTCATGTGCCATCTTTTGCTGATACTTGGGGATGGGT TATGGCCTCAGACCAACCCTTCTGTTTCAATGCTGAGGAGATAGACAGGAGGGTTGATGAAAGAATTGATGGTGAATTACTTCTTCTGAATGGTGCTGCA TTCCTCTCCTCCGCCACCCTGAACAAGGCTGTTTCGCAATCGCTGATGAACGAGACTCATGTCTACACCGAGGATAATGCAAGATTTCTTCATGGGCATG GGGTGGCTAACAAAAATTGA
AA sequence Show only first row Show all	>Potri.006G222200.1 pacid=42769912 polypeptide=Potri.006G222200.1.p locus=Potri.006G222200 ID=Potri.006G222200.1.v4.1 annot-version=v4.1 MGTEAVEIIYANGLSKICDGINQTHSDDQTHNDSSWFEESIDEDLKWSFALNSVLCKVTSEYQDITLLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHP ALLCHPNPQNVFIMGGGEGSAAREALKHKSIEKVVMCDIDQEVVDFCRRHLTVNQEAFSNKKLDLVINDAKAEIEKRNEKFDVIVGDLADPVEGGPCYQL YTKSFYEQILKPKLNDNGIFVTQAGPAGVFTHKEVFSSIYNTIKQVFKYVVAYSAHVPSFADTWGWVMASDQPFCFNAEEIDRRVDERIDGELLLLNGAA FLSSATLNKAVSQSLMNETHVYTEDNARFLHGHGVANKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.006G222200 [exp]	0	1
AT4G38350			Patched family protein (.1.2)		Potri.005G251800 [exp]	3.16	0.6373
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Potri.002G049800 [exp]	6.48	0.6192	HMT1,SMTA.1
AT3G15040			Protein of unknown function, D...		Potri.016G076300 [exp]	8.77	0.5923
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Potri.018G025100 [exp]	16.97	0.5605	SPS.2
AT1G71960		ATABCG25, ABCG2...	Arabidopsis thaliana ATP-bindi...		Potri.019G083000 [exp]	17.05	0.6450
AT5G50010	bHLH		sequence-specific DNA binding ...		Potri.005G158100 [exp]	18.00	0.5828
AT5G07290		AML4	MEI2-like 4 (.1)		Potri.012G107100 [exp]	24.45	0.5679
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.002G164400 [exp]	33.40	0.6021
AT1G71960		ATABCG25, ABCG2...	Arabidopsis thaliana ATP-bindi...		Potri.013G111900 [exp]	37.61	0.5997
AT2G37870			Bifunctional inhibitor/lipid-t...		Potri.008G141000 [exp]	37.96	0.5801

Compare expression of checked genes

Potri.006G222200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.