Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12080 765 / 0 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 725 / 0 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT1G53470 431 / 2e-138 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT3G14810 429 / 1e-137 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT1G78610 417 / 1e-133 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT2G17000 392 / 3e-124 Mechanosensitive ion channel family protein (.1) AT2G17010 293 / 2e-87 Mechanosensitive ion channel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G144100 [exp] 689 / 0 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G073000 [exp] 525 / 8e-177 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 506 / 1e-169 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.011G105500 [exp] 439 / 2e-141 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.001G384100 [exp] 433 / 4e-139 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.004G178900 [exp] 427 / 6e-137 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.005G246600 [exp] 392 / 2e-124 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027617 [exp] 883 / 0 AT5G12080 839 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10016423 [exp] 790 / 0 AT5G12080 786 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10019694 [exp] 783 / 0 AT5G12080 778 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10006347 [exp] 594 / 0 AT5G12080 659 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10002960 [exp] 542 / 0 AT5G12080 605 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10036586 [exp] 491 / 2e-163 AT5G12080 573 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10036587 [exp] 489 / 2e-163 AT5G12080 549 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10042499 [exp] 466 / 9e-152 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10029701 [exp] 460 / 2e-151 AT5G12080 523 / 9e-177 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10038148 [exp] 463 / 2e-150 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [poplar] [flax] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Potri.006G222500.1 pacid=42768152 polypeptide=Potri.006G222500.1.p locus=Potri.006G222500 ID=Potri.006G222500.1.v4.1 annot-version=v4.1 ATGGATGTTAAAGAGGGAGTTCGAGGTGAAATACTTATGTCAGAAAAGAGAGCCGCTCATGGTGGAGATGTGTTAATAGCAATCTCAAGTGAAGAAACTT CAAATGCCAGTGTGGACACTAAAACCCCAAAAGGGCCTGCTTCAACAGACCGTGAAACTCTTACTCCTAGGCAAAGCAGACCAAATTCACCATTTAGGGA ATCGAGCAATGGTGCGTTTGCAAAATCAGTGCCATTCAGCTGCCCCTCACCAGAGATTTCATGGTCTAGTCAGACCCAGAGAAAGCCCCCCAAAATCCCC ACTCCCAACGAAAACCTTACTAGAAGAAGATCACTTGTAAGGTCAGTGTACTCAAAGCCTAAGTCCCGATTTGGGGAGCAACCATATGGTATTGATTCTA CCTTGCTTGAAGAGAATGTTTCAACTTTGCAAGAACAGATTGCCACGGCTTCTCCTCACAGGAATTTACTTACTAGGGGGTCACCTAATAACAAGTCTGC TTCTAGTGTTATAACACCTAAAACACCATTGATGGCATCTCCTGGAGGACCAGCAGATGAGGAGGACGAGGAAGAGGTTTGGAAGAGGGTTGAATCTAGT AAACAGAAGCAGCGTAGGAGAGTCGGAGCTAAGGCTGTGATTGAGTGGGTTGCATTTTTGTGCATTCTGGGATGTTTGATTGCTAGCTTGACTGTTGAAA AATTGGAAAAGACTACGATTTGGAGCTTGGAGTTTTGGAAATGGTGTGTTCTTGTCATGGTGATATTTAGTGGAATGTTGGTTACTAATTGGTTTATGCA TGTTATTGTTTTCTTGATTGAGAGGAACTTTTTGCTGAAAAAGAAGGTGCTTTATTTTGTCCATGGTTTGAAGAAGAGTGTTCAGGTGTTTATTTGGATA GCTTTGATTCTTCTTGCATGGGCATTTTTATTCAATCGTGGAGTTGAACGATCTAAAACTGCCACAAAGATCTTAGGTTGCATAACCGTGACTCTTATGT CTCTTCTAATTGGATCTTTTCTGTGGTTGTTGAAGACTTTATCGCTAAAGATTTTAGCATCTAATTTCCATGTTAGTAATTTCTTTGATAGAACTCAAGA ATCTATCTTTCATCAGTATGTTCTGCAAACCCTTTCAGGGCCTCCACTTATAGAGGAGGCTGAGAGAGTTGGGAGATCACCTAGCATGGGTCAGTTAAGC TTCAGGAGTACCAAAAAGGGAAAAGCAACAAAAGAGAAAAAAGTGATTGATATGGCCAAGGTTCATAAGATGAAGCAAGGAAAGGTTTCTGCTTGGACGA TGAAGGTCTTGGTTGATGCTGTAACAAGTTCAGGACTGTCTACAATCTCCAATACATTGGATGAAAGTTTTGCTGATAGAGAGGTTGAGCAATCTGACAA GGAGATCACAAATGAGATGGAAGCGACTGCTGCTGCCTATTACATTTTCAGGAATGTTGCCCAGCCTGGTTGCAAATACATTGACGAGGAGGACCTGTTA AGGTTCATGATCAAGGAAGAGGTGGATCTTGTTTTTCCACTATTTGAAGGATATGAGACTGGACGAGTTGACAGAAAAGCTCTAACTAACTGGGTGGTGA GGGTTTACAATGGCCGGAAAGCGCTTGCACATTCTTTAAATGACACCAAAACAGCTGTTAAACAATTGCACAAACTTGTGACAGGGATCCTGGTCATTCT GACCATTGTTATTTGGCTTCTAATGATGGAAATCGCAACAACGAAAGTACTTGTTTTCCTCTCGTCACAGCTTGTAGCAGCAGCTTTTATGTTTGGGAGC ACCTGCAAGACCATATTTGAAGCTATCATATTTGTATTTGTGATGCATCCATTTGATGTTGGTGATCGTTGTGTTGTTGATGGCATTCCAATGCTGGTTG AAGAAATGAACATCTTAAATACTGTGTTTCTGAAGCTTGATAATGAAAAGATATACTATCCAAATTCAGTTTTGGCTACCAAGCCTATTAGCAATTACTT CAGAAGCCCAGATATGGGTGATTCTGTGGAATTTGCAATTGATTTTGCAACACCAGTCGAGAAGATTGGATTTCTGAAAGATAAAATTAAGAAGCACTTG GAGAAGACTCCCCATCACTGGCATCCTAACCACAATGTTGTGGTGAAGGAAATTGAGAATGTGAACAAGTTAAAGATGGCTCTCTATTGTACTCACACGA TGAACTTCCAAGAATATGGAGAGAAAAACAAGCGGAAGTCGGAACTGGTTATTGAAATAAAGAAAATTTTCGAAGAGTTAAATATAAAATACTATCTGCT TCCCCAGCAAGTTCACCTCAACCCTATTGGGTCTGAATCAACGCACGTGACCAACAAATGA
AA sequence Show only first row Show all	>Potri.006G222500.1 pacid=42768152 polypeptide=Potri.006G222500.1.p locus=Potri.006G222500 ID=Potri.006G222500.1.v4.1 annot-version=v4.1 MDVKEGVRGEILMSEKRAAHGGDVLIAISSEETSNASVDTKTPKGPASTDRETLTPRQSRPNSPFRESSNGAFAKSVPFSCPSPEISWSSQTQRKPPKIP TPNENLTRRRSLVRSVYSKPKSRFGEQPYGIDSTLLEENVSTLQEQIATASPHRNLLTRGSPNNKSASSVITPKTPLMASPGGPADEEDEEEVWKRVESS KQKQRRRVGAKAVIEWVAFLCILGCLIASLTVEKLEKTTIWSLEFWKWCVLVMVIFSGMLVTNWFMHVIVFLIERNFLLKKKVLYFVHGLKKSVQVFIWI ALILLAWAFLFNRGVERSKTATKILGCITVTLMSLLIGSFLWLLKTLSLKILASNFHVSNFFDRTQESIFHQYVLQTLSGPPLIEEAERVGRSPSMGQLS FRSTKKGKATKEKKVIDMAKVHKMKQGKVSAWTMKVLVDAVTSSGLSTISNTLDESFADREVEQSDKEITNEMEATAAAYYIFRNVAQPGCKYIDEEDLL RFMIKEEVDLVFPLFEGYETGRVDRKALTNWVVRVYNGRKALAHSLNDTKTAVKQLHKLVTGILVILTIVIWLLMMEIATTKVLVFLSSQLVAAAFMFGS TCKTIFEAIIFVFVMHPFDVGDRCVVDGIPMLVEEMNILNTVFLKLDNEKIYYPNSVLATKPISNYFRSPDMGDSVEFAIDFATPVEKIGFLKDKIKKHL EKTPHHWHPNHNVVVKEIENVNKLKMALYCTHTMNFQEYGEKNKRKSELVIEIKKIFEELNIKYYLLPQQVHLNPIGSESTHVTNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.006G222500 [exp]	0	1
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Potri.001G219700 [exp]	2.44	0.7109	AGO903,AGO4.1
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Potri.014G128200 [exp]	4.58	0.7050	Pt-APP.2
AT5G15280			Pentatricopeptide repeat (PPR)...		Potri.017G086000 [exp]	6.48	0.7223
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Potri.008G079300 [exp]	13.41	0.7000
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Potri.014G084500 [exp]	20.97	0.6999
AT5G45290			RING/U-box superfamily protein...		Potri.006G190500 [exp]	22.84	0.6636
AT5G23110			Zinc finger, C3HC4 type (RING ...		Potri.005G093000 [exp]	25.69	0.6632
AT3G14120			unknown protein		Potri.001G165900 [exp]	26.58	0.6724
AT1G77310			unknown protein		Potri.005G067800 [exp]	34.52	0.6693
AT1G29195			unknown protein		Potri.004G057500 [exp]	39.54	0.5811

Compare expression of checked genes

Potri.006G222500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.